Wall clock time and date at job start Mon Mar 30 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48497 * 109.47345 * 275.39032 * 3 2 1 5 5 H 1.48495 * 109.47197 * 35.39128 * 3 2 1 6 6 H 1.48503 * 109.47148 * 155.39129 * 3 2 1 7 7 C 1.39848 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99856 * 341.58685 * 7 2 1 9 9 C 1.40971 * 119.99885 * 161.86380 * 7 2 1 10 10 C 1.40467 * 120.19206 * 329.64907 * 9 7 2 11 11 C 1.38847 * 120.09161 * 179.74701 * 10 9 7 12 12 S 1.76071 * 130.40930 * 180.18583 * 11 10 9 13 13 C 1.75479 * 91.54352 * 180.34089 * 12 11 10 14 14 C 1.32504 * 110.83820 * 359.97438 * 13 12 11 15 15 C 1.40333 * 120.22678 * 0.55733 * 11 10 9 16 16 C 1.42299 * 119.01048 * 359.72061 * 15 11 10 17 17 O 1.35930 * 119.62261 * 180.02562 * 16 15 11 18 18 C 1.35897 * 120.75946 * 359.97438 * 16 15 11 19 19 F 1.35094 * 119.85412 * 180.02562 * 18 16 15 20 20 H 0.96998 * 119.99504 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.95203 * 0.02562 * 10 9 7 22 22 H 1.08004 * 124.57935 * 179.97438 * 13 12 11 23 23 H 1.08001 * 122.05843 * 180.02562 * 14 13 12 24 24 H 0.96698 * 113.99866 * 269.98434 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.3769 2.1122 -1.3938 5 1 1.5024 2.6171 0.8108 6 1 3.5932 1.4099 0.5830 7 6 2.0084 -1.2111 -0.0005 8 1 1.5099 -2.1226 0.2945 9 6 3.3656 -1.2413 -0.3806 10 6 3.8578 -0.3168 -1.3167 11 6 5.1960 -0.3450 -1.6856 12 16 6.0912 0.6701 -2.8118 13 6 7.5741 -0.2171 -2.5066 14 6 7.3710 -1.1861 -1.6260 15 6 6.0606 -1.3034 -1.1348 16 6 5.5456 -2.2368 -0.1922 17 8 6.3722 -3.1701 0.3495 18 6 4.2372 -2.2052 0.1735 19 9 3.7678 -3.0998 1.0703 20 1 -0.4849 0.8401 -0.0004 21 1 3.1953 0.4198 -1.7467 22 1 8.5241 -0.0022 -2.9734 23 1 8.1643 -1.8454 -1.3060 24 1 6.4146 -3.9961 -0.1515 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306838014.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:46 Heat of formation + Delta-G solvation = -57.222292 kcal Electronic energy + Delta-G solvation = -14339.669842 eV Core-core repulsion = 11644.612343 eV Total energy + Delta-G solvation = -2695.057499 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.70960 -38.92557 -36.36249 -35.10021 -33.16303 -29.41141 -28.81643 -25.38353 -22.42367 -22.12759 -19.83335 -18.61536 -17.20721 -16.51489 -16.04424 -15.63609 -15.21365 -14.68776 -13.89784 -13.77839 -13.07622 -12.96305 -12.65410 -12.54687 -12.17973 -11.81052 -11.29621 -10.98717 -10.78321 -10.48729 -10.01243 -9.93398 -9.77158 -9.31954 -8.64170 -7.69195 -7.35891 -6.97060 -4.82501 1.44912 2.05534 2.32871 2.73715 2.84015 3.00071 3.06133 3.19308 3.74245 4.03945 4.77573 4.86662 5.24547 5.66663 5.80042 6.04476 6.23500 6.50725 6.55994 6.60798 6.85473 7.06386 7.23598 7.28594 7.30614 7.88515 8.02376 8.23449 8.36032 9.62693 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.012458 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.696327 B = 2247.076182 C = 3263.551473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.082 3.918 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.401 4.401 8 H 0.105 0.895 9 C 0.085 3.915 10 C -0.225 4.225 11 C -0.048 4.048 12 S 0.018 5.982 13 C -0.260 4.260 14 C -0.065 4.065 15 C -0.214 4.214 16 C 0.136 3.864 17 O -0.496 6.496 18 C 0.003 3.997 19 F -0.144 7.144 20 H 0.295 0.705 21 H 0.116 0.884 22 H 0.151 0.849 23 H 0.126 0.874 24 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 0.299 -3.049 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.427 4.427 8 H 0.122 0.878 9 C 0.078 3.922 10 C -0.252 4.252 11 C -0.164 4.164 12 S 0.278 5.722 13 C -0.393 4.393 14 C -0.094 4.094 15 C -0.220 4.220 16 C 0.089 3.911 17 O -0.305 6.305 18 C -0.018 4.018 19 F -0.122 7.122 20 H 0.106 0.894 21 H 0.133 0.867 22 H 0.168 0.832 23 H 0.144 0.856 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.707 1.979 -3.501 7.821 hybrid contribution 0.428 -0.998 0.644 1.262 sum 7.136 0.981 -2.857 7.749 Atomic orbital electron populations 1.69694 1.08235 1.31451 1.30149 1.26307 0.94943 1.02229 0.90666 0.86247 0.81652 0.78867 0.79761 1.18730 1.20899 1.16092 1.19544 0.92375 0.96921 1.33906 0.87756 1.17399 0.93037 0.90571 0.91179 1.20029 0.92648 1.06947 1.05560 1.22131 0.97071 0.97910 0.99244 1.83757 1.02123 1.38245 1.48076 1.24544 1.00891 1.04558 1.09267 1.19595 0.95602 0.97963 0.96273 1.17672 0.93878 1.03617 1.06809 1.17683 0.87043 0.91711 0.94671 1.84762 1.66065 1.26903 1.52763 1.17470 0.90908 0.96380 0.97055 1.91353 1.89134 1.66132 1.65623 0.89416 0.86669 0.83174 0.85578 0.76490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.98 13.93 55.54 0.77 -18.20 14 2 C 0.08 2.01 5.40 -17.34 -0.09 1.92 14 3 Si 0.91 19.69 24.52 -169.99 -4.17 15.52 14 4 H -0.26 -5.47 6.71 56.52 0.38 -5.10 14 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 6 H -0.24 -5.41 6.87 56.52 0.39 -5.03 14 7 C -0.40 -10.26 9.23 -37.95 -0.35 -10.61 14 8 H 0.10 2.79 7.96 -52.49 -0.42 2.38 14 9 C 0.09 2.11 5.09 -106.87 -0.54 1.56 14 10 C -0.23 -5.32 7.19 -38.52 -0.28 -5.60 14 11 C -0.05 -1.07 6.46 -38.57 -0.25 -1.32 14 12 S 0.02 0.34 23.29 -107.50 -2.50 -2.17 14 13 C -0.26 -4.44 11.09 28.82 0.32 -4.12 14 14 C -0.06 -1.19 9.96 -40.67 -0.41 -1.60 14 15 C -0.21 -4.59 5.90 -106.72 -0.63 -5.22 14 16 C 0.14 2.98 6.71 -38.86 -0.26 2.71 14 17 O -0.50 -9.29 13.14 -19.52 -0.26 -9.54 14 18 C 0.00 0.07 7.22 -39.27 -0.28 -0.22 14 19 F -0.14 -3.40 16.51 2.25 0.04 -3.36 14 20 H 0.29 6.45 8.30 -40.82 -0.34 6.11 14 21 H 0.12 2.68 4.77 -52.48 -0.25 2.43 14 22 H 0.15 2.08 8.06 -52.48 -0.42 1.65 14 23 H 0.13 2.01 8.06 -52.49 -0.42 1.59 14 24 H 0.38 5.14 9.06 45.56 0.41 5.55 14 LS Contribution 232.55 15.07 3.50 3.50 Total: -1.00 -26.88 232.55 -5.66 -32.54 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -0.27 Total: 4.20 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.77 Total: -22.48 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.77 Total: -18.20 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.26 Total: -9.54 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.17 Total: 15.52 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.50 Total: -2.17 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -26.88 -5.66 -32.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306838014.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.685 kcal (2) G-P(sol) polarization free energy of solvation -26.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds