Wall clock time and date at job start Mon Mar 30 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31091 * 1 3 3 Si 1.86793 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47223 * 240.00415 * 3 2 1 5 5 H 1.48507 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47273 * 120.00257 * 3 2 1 7 7 C 1.39673 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00162 * 168.44441 * 7 2 1 9 9 C 1.40795 * 120.00036 * 348.43646 * 7 2 1 10 10 C 1.36465 * 123.30152 * 337.15834 * 9 7 2 11 11 S 1.69982 * 111.95125 * 179.97438 * 10 9 7 12 12 C 1.75799 * 93.23087 * 359.97438 * 11 10 9 13 13 C 1.39793 * 130.13391 * 180.02562 * 12 11 10 14 14 C 1.38137 * 120.38133 * 180.02562 * 13 12 11 15 15 O 1.35896 * 119.95541 * 179.97438 * 14 13 12 16 16 C 1.39098 * 120.09685 * 359.74667 * 14 13 12 17 17 C 1.37577 * 120.17213 * 0.48987 * 16 14 13 18 18 F 1.35101 * 119.82052 * 179.79229 * 17 16 14 19 19 C 1.39338 * 110.18518 * 0.02562 * 12 11 10 20 20 H 0.97004 * 120.00471 * 0.02562 * 1 2 3 21 21 H 1.07997 * 124.02112 * 0.03051 * 10 9 7 22 22 H 1.08000 * 119.80933 * 0.02562 * 13 12 11 23 23 H 0.96696 * 114.00019 * 90.00009 * 15 14 13 24 24 H 1.07999 * 119.91124 * 180.25860 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0986 1.6964 -1.2125 5 1 1.2799 2.7465 0.0006 6 1 3.0987 1.6963 1.2124 7 6 2.0092 -1.2096 -0.0005 8 1 3.0728 -1.2191 -0.1879 9 6 1.3266 -2.4167 0.2433 10 6 0.1392 -2.4839 0.9125 11 16 -0.4274 -4.0813 1.0424 12 6 0.9500 -4.7458 0.1754 13 6 1.2517 -6.0695 -0.1579 14 6 2.4072 -6.3689 -0.8532 15 8 2.6922 -7.6588 -1.1722 16 6 3.2771 -5.3515 -1.2314 17 6 2.9958 -4.0447 -0.9062 18 9 3.8479 -3.0626 -1.2734 19 6 1.8215 -3.7246 -0.1977 20 1 -0.4851 0.8400 -0.0004 21 1 -0.3792 -1.6245 1.3112 22 1 0.5775 -6.8626 0.1299 23 1 2.3395 -7.9395 -2.0277 24 1 4.1776 -5.5886 -1.7786 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306849420.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:09 Heat of formation + Delta-G solvation = -59.227984 kcal Electronic energy + Delta-G solvation = -14138.501174 eV Core-core repulsion = 11443.356702 eV Total energy + Delta-G solvation = -2695.144472 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.13723 -39.06407 -36.81332 -34.47120 -31.97542 -29.89696 -27.59342 -26.04534 -22.71194 -21.93023 -19.84711 -18.47376 -16.94579 -16.39504 -15.87206 -15.50444 -14.93969 -14.77788 -14.45138 -14.07334 -13.06068 -13.00412 -12.29745 -12.24671 -11.65449 -11.39427 -11.15766 -11.03389 -10.53232 -10.32881 -10.19645 -9.95450 -9.48824 -9.21753 -8.47666 -7.53159 -6.79128 -6.68983 -4.35675 1.50194 1.65867 2.62191 2.97633 3.08021 3.12182 3.52386 3.68287 3.97455 4.14810 4.47242 5.07097 5.21336 5.42731 5.48521 5.89939 6.10244 6.37449 6.58559 6.70454 6.78665 7.14752 7.29217 7.62374 7.89485 7.93948 8.41125 8.72474 8.84027 10.25240 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.009269 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.458450 B = 3020.119017 C = 3851.134972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.085 3.915 10 C -0.356 4.356 11 S 0.067 5.933 12 C -0.113 4.113 13 C -0.129 4.129 14 C 0.119 3.881 15 O -0.497 6.497 16 C -0.209 4.209 17 C 0.159 3.841 18 F -0.131 7.131 19 C -0.104 4.104 20 H 0.278 0.722 21 H 0.166 0.834 22 H 0.125 0.875 23 H 0.384 0.616 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -6.877 -1.921 7.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.466 4.466 8 H 0.100 0.900 9 C 0.077 3.923 10 C -0.492 4.492 11 S 0.332 5.668 12 C -0.229 4.229 13 C -0.154 4.154 14 C 0.072 3.928 15 O -0.306 6.306 16 C -0.232 4.232 17 C 0.138 3.862 18 F -0.109 7.109 19 C -0.116 4.116 20 H 0.089 0.911 21 H 0.183 0.817 22 H 0.143 0.857 23 H 0.239 0.761 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.267 -7.144 -0.689 7.182 hybrid contribution 1.502 1.660 -1.268 2.573 sum 1.769 -5.483 -1.957 6.085 Atomic orbital electron populations 1.69849 1.07303 1.28795 1.36721 1.25792 0.94865 1.01119 0.92969 0.86254 0.79881 0.80005 0.79944 1.19026 1.20379 1.18915 1.19088 0.96119 0.89695 1.41691 0.89999 1.17218 0.92930 0.89302 0.92883 1.24377 1.07478 0.97013 1.20315 1.81913 1.22706 1.02644 1.59542 1.22349 1.00432 0.95426 1.04678 1.20551 0.97299 0.94273 1.03264 1.17575 0.93094 0.82853 0.99299 1.84812 1.79165 1.24790 1.41827 1.20831 1.03227 0.90827 1.08349 1.17254 0.87684 0.84298 0.96999 1.91461 1.68766 1.61477 1.89204 1.19779 0.94549 0.95786 1.01505 0.91082 0.81732 0.85712 0.76102 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 10.84 55.54 0.60 -20.38 14 2 C 0.07 1.76 5.35 -17.33 -0.09 1.67 14 3 Si 0.91 19.31 29.57 -169.99 -5.03 14.28 14 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 14 5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 14 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 14 7 C -0.43 -11.73 8.77 -38.08 -0.33 -12.06 14 8 H 0.08 2.17 6.52 -52.48 -0.34 1.83 14 9 C 0.09 2.27 5.68 -106.18 -0.60 1.67 14 10 C -0.36 -9.18 9.51 30.09 0.29 -8.89 14 11 S 0.07 1.45 22.96 -107.50 -2.47 -1.02 14 12 C -0.11 -2.44 6.44 -38.59 -0.25 -2.69 14 13 C -0.13 -2.37 10.00 -39.04 -0.39 -2.77 14 14 C 0.12 2.04 6.69 -39.30 -0.26 1.78 14 15 O -0.50 -6.97 13.50 -19.41 -0.26 -7.23 14 16 C -0.21 -3.82 9.93 -39.50 -0.39 -4.21 14 17 C 0.16 3.46 7.34 -38.84 -0.28 3.18 14 18 F -0.13 -2.92 15.41 2.25 0.03 -2.88 14 19 C -0.10 -2.52 6.03 -105.12 -0.63 -3.15 14 20 H 0.28 6.69 8.30 -40.82 -0.34 6.35 14 21 H 0.17 4.48 6.31 -52.49 -0.33 4.15 14 22 H 0.12 1.97 8.06 -52.49 -0.42 1.55 14 23 H 0.38 3.36 9.06 45.56 0.41 3.77 14 24 H 0.13 2.07 8.06 -52.49 -0.42 1.65 14 LS Contribution 235.63 15.07 3.55 3.55 Total: -1.00 -28.68 235.63 -6.77 -35.45 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -0.24 Total: 3.71 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -2.96 Total: -25.48 kcal Atomic # 7 Polarization: -20.99 SS G_CDS: 0.60 Total: -20.38 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.26 Total: -7.23 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.03 Total: -2.88 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.47 Total: -1.02 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.68 -6.77 -35.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306849420.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.777 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds