Wall clock time and date at job start Mon Mar 30 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31091 * 1 3 3 Si 1.86793 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47223 * 240.00415 * 3 2 1 5 5 H 1.48507 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47273 * 120.00257 * 3 2 1 7 7 C 1.39673 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00162 * 168.44441 * 7 2 1 9 9 C 1.40795 * 120.00036 * 348.43646 * 7 2 1 10 10 C 1.36465 * 123.30152 * 337.15834 * 9 7 2 11 11 S 1.69982 * 111.95125 * 179.97438 * 10 9 7 12 12 C 1.75799 * 93.23087 * 359.97438 * 11 10 9 13 13 C 1.39793 * 130.13391 * 180.02562 * 12 11 10 14 14 C 1.38137 * 120.38133 * 180.02562 * 13 12 11 15 15 O 1.35896 * 119.95541 * 179.97438 * 14 13 12 16 16 C 1.39098 * 120.09685 * 359.74667 * 14 13 12 17 17 C 1.37577 * 120.17213 * 0.48987 * 16 14 13 18 18 F 1.35101 * 119.82052 * 179.79229 * 17 16 14 19 19 C 1.39338 * 110.18518 * 0.02562 * 12 11 10 20 20 H 0.97004 * 120.00471 * 0.02562 * 1 2 3 21 21 H 1.07997 * 124.02112 * 0.03051 * 10 9 7 22 22 H 1.08000 * 119.80933 * 0.02562 * 13 12 11 23 23 H 0.96696 * 114.00019 * 90.00009 * 15 14 13 24 24 H 1.07999 * 119.91124 * 180.25860 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0986 1.6964 -1.2125 5 1 1.2799 2.7465 0.0006 6 1 3.0987 1.6963 1.2124 7 6 2.0092 -1.2096 -0.0005 8 1 3.0728 -1.2191 -0.1879 9 6 1.3266 -2.4167 0.2433 10 6 0.1392 -2.4839 0.9125 11 16 -0.4274 -4.0813 1.0424 12 6 0.9500 -4.7458 0.1754 13 6 1.2517 -6.0695 -0.1579 14 6 2.4072 -6.3689 -0.8532 15 8 2.6922 -7.6588 -1.1722 16 6 3.2771 -5.3515 -1.2314 17 6 2.9958 -4.0447 -0.9062 18 9 3.8479 -3.0626 -1.2734 19 6 1.8215 -3.7246 -0.1977 20 1 -0.4851 0.8400 -0.0004 21 1 -0.3792 -1.6245 1.3112 22 1 0.5775 -6.8626 0.1299 23 1 2.3395 -7.9395 -2.0277 24 1 4.1776 -5.5886 -1.7786 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306849420.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:08 Heat of formation + Delta-G solvation = -77.798342 kcal Electronic energy + Delta-G solvation = -14139.306445 eV Core-core repulsion = 11443.356702 eV Total energy + Delta-G solvation = -2695.949743 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.81320 -40.54076 -38.30866 -36.20067 -33.74944 -31.47025 -29.27876 -27.94762 -24.32953 -23.52390 -21.63466 -19.92015 -18.76771 -17.98256 -17.53288 -17.04984 -16.58459 -16.50878 -15.98868 -15.55137 -14.81745 -14.59339 -14.01481 -13.87567 -13.38294 -13.17544 -12.86901 -12.69606 -12.13375 -12.06791 -11.69858 -11.61828 -11.27899 -11.03112 -10.15451 -9.20822 -8.64276 -8.50326 -6.33298 -0.09535 0.10406 0.97238 1.25986 1.34609 1.46368 1.79893 1.85262 2.20393 2.47698 3.08294 3.26624 3.56214 3.89468 4.06716 4.30594 4.56003 4.91320 5.02231 5.13807 5.20523 5.23335 5.59651 5.81015 5.93660 6.43961 6.77420 6.86735 6.89001 8.35969 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.009269 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.458450 B = 3020.119017 C = 3851.134972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.026 3.974 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.470 4.470 8 H 0.074 0.926 9 C 0.058 3.942 10 C -0.388 4.388 11 S 0.106 5.894 12 C -0.120 4.120 13 C -0.127 4.127 14 C 0.148 3.852 15 O -0.490 6.490 16 C -0.192 4.192 17 C 0.134 3.866 18 F -0.142 7.142 19 C -0.147 4.147 20 H 0.285 0.715 21 H 0.141 0.859 22 H 0.157 0.843 23 H 0.415 0.585 24 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -8.861 -2.656 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.093 0.907 9 C 0.049 3.951 10 C -0.524 4.524 11 S 0.370 5.630 12 C -0.236 4.236 13 C -0.151 4.151 14 C 0.100 3.900 15 O -0.303 6.303 16 C -0.214 4.214 17 C 0.113 3.887 18 F -0.121 7.121 19 C -0.158 4.158 20 H 0.095 0.905 21 H 0.158 0.842 22 H 0.175 0.825 23 H 0.275 0.725 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.036 -9.163 -1.448 9.334 hybrid contribution 1.302 2.021 -1.107 2.647 sum 2.338 -7.141 -2.556 7.937 Atomic orbital electron populations 1.69932 1.08626 1.29972 1.37150 1.26677 0.95696 1.04287 0.92037 0.85216 0.78657 0.75717 0.79932 1.18604 1.18923 1.18579 1.19339 0.96091 0.91169 1.43667 0.90738 1.17646 0.93562 0.90818 0.93035 1.24300 1.07900 0.99091 1.21133 1.81418 1.22457 0.99298 1.59803 1.22608 0.99956 0.96502 1.04523 1.20895 0.98256 0.93379 1.02610 1.17521 0.91551 0.83845 0.97049 1.84758 1.79199 1.22332 1.44049 1.21175 1.04121 0.89310 1.06823 1.17548 0.87492 0.85531 0.98116 1.91421 1.68929 1.62290 1.89423 1.19884 0.96624 0.95307 1.03960 0.90477 0.84171 0.82533 0.72500 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.26 10.84 21.79 0.24 -45.03 14 2 C 0.03 1.38 5.35 85.15 0.46 1.84 14 3 Si 0.98 40.50 29.57 68.60 2.03 42.53 14 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 14 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 14 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 14 7 C -0.47 -26.64 8.77 23.24 0.20 -26.44 14 8 H 0.07 4.16 6.52 -2.91 -0.02 4.14 14 9 C 0.06 3.25 5.68 -20.88 -0.12 3.13 14 10 C -0.39 -20.96 9.51 67.41 0.64 -20.32 14 11 S 0.11 4.58 22.96 -56.49 -1.30 3.28 14 12 C -0.12 -5.08 6.44 22.91 0.15 -4.93 14 13 C -0.13 -4.22 10.00 22.62 0.23 -3.99 14 14 C 0.15 4.44 6.69 22.45 0.15 4.59 14 15 O -0.49 -10.86 13.50 -92.39 -1.25 -12.10 14 16 C -0.19 -6.39 9.93 22.32 0.22 -6.17 14 17 C 0.13 5.79 7.34 22.75 0.17 5.96 14 18 F -0.14 -6.44 15.41 44.97 0.69 -5.74 14 19 C -0.15 -7.17 6.03 -20.19 -0.12 -7.29 14 20 H 0.28 14.11 8.30 -92.71 -0.77 13.34 14 21 H 0.14 8.11 6.31 -2.91 -0.02 8.09 14 22 H 0.16 4.19 8.06 -2.91 -0.02 4.17 14 23 H 0.42 4.59 9.06 -74.06 -0.67 3.92 14 24 H 0.16 4.40 8.06 -2.91 -0.02 4.38 14 Total: -1.00 -64.73 235.63 2.98 -61.74 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.60 Total: 8.94 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 1.97 Total: -53.62 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.25 Total: -12.10 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.69 Total: -5.74 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.30 Total: 3.28 kcal Total: -64.73 2.98 -61.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306849420.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.055 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds