Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99851 * 2 1 4 4 H 1.48493 * 109.47001 * 239.99874 * 3 2 1 5 5 H 1.48502 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46958 * 119.99931 * 3 2 1 7 7 C 1.37879 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.37751 * 120.03756 * 265.31540 * 10 9 7 12 12 C 1.38633 * 120.37792 * 180.29880 * 11 10 9 13 13 C 1.37938 * 120.44942 * 359.68145 * 12 11 10 14 14 C 1.39013 * 120.06377 * 359.97438 * 13 12 11 15 15 S 1.76201 * 120.18999 * 180.02562 * 14 13 12 16 16 C 1.39778 * 120.03512 * 84.99920 * 10 9 7 17 17 C 1.47233 * 120.22221 * 359.97438 * 16 10 9 18 18 O 1.21533 * 120.00211 * 269.72605 * 17 16 10 19 19 O 1.34778 * 119.99787 * 89.72736 * 17 16 10 20 20 H 0.96993 * 120.00184 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47733 * 59.99417 * 9 7 2 22 22 H 1.08999 * 109.46791 * 299.99429 * 9 7 2 23 23 H 1.07993 * 119.81309 * 359.97438 * 11 10 9 24 24 H 1.07993 * 119.77190 * 179.70170 * 12 11 10 25 25 H 1.07999 * 119.97203 * 180.02562 * 13 12 11 26 26 H 1.40995 * 100.00077 * 269.97837 * 15 14 13 27 27 H 0.96700 * 117.00264 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6046 -4.2319 -1.1880 12 6 3.5002 -5.2900 -1.1957 13 6 4.0329 -5.7636 -0.0147 14 6 3.6737 -5.1799 1.1947 15 16 4.3527 -5.7818 2.7052 16 6 2.7653 -4.1077 1.2060 17 6 2.3758 -3.4798 2.4795 18 8 3.0151 -2.5427 2.9156 19 8 1.3101 -3.9442 3.1616 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6243 -2.5567 0.8903 23 1 2.1938 -3.8695 -2.1187 24 1 3.7831 -5.7464 -2.1327 25 1 4.7304 -6.5881 -0.0297 26 1 3.3912 -6.7594 3.0335 27 1 0.8332 -4.6914 2.7752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306851381.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = -65.581931 kcal Electronic energy + Delta-G solvation = -14562.499586 eV Core-core repulsion = 11990.539892 eV Total energy + Delta-G solvation = -2571.959695 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92495 -38.05107 -35.79660 -33.68039 -31.57809 -31.03025 -27.43982 -24.22997 -23.43682 -21.71843 -20.68435 -18.24377 -17.38465 -16.42340 -15.77135 -15.72192 -15.47189 -14.57044 -14.22212 -13.98540 -13.46817 -12.87591 -12.77318 -12.23811 -11.84625 -11.60916 -11.28257 -10.93008 -10.79267 -10.63175 -10.54044 -9.87800 -9.63112 -9.58505 -8.74570 -8.46963 -8.29507 -8.15817 -6.10445 -4.14501 0.96851 1.48882 1.72564 2.65026 2.84629 3.34572 3.37899 3.44541 3.77353 3.87470 4.44896 4.83630 5.03369 5.24829 5.31119 5.48504 5.64683 5.77020 6.17600 6.36371 6.51482 6.64491 7.04963 7.27227 7.41965 7.72082 7.85000 8.14859 8.23164 8.88679 9.51114 10.99763 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.008614 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.688681 B = 3249.616860 C = 3658.089245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.042 3.958 10 C -0.003 4.003 11 C -0.098 4.098 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.077 4.077 15 S -0.150 6.150 16 C -0.132 4.132 17 C 0.559 3.441 18 O -0.434 6.434 19 O -0.508 6.508 20 H 0.264 0.736 21 H 0.039 0.961 22 H 0.030 0.970 23 H 0.134 0.866 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.097 0.903 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -13.588 -0.666 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.005 3.995 10 C -0.005 4.005 11 C -0.117 4.117 12 C -0.127 4.127 13 C -0.122 4.122 14 C -0.189 4.189 15 S 0.007 5.993 16 C -0.137 4.137 17 C 0.396 3.604 18 O -0.315 6.315 19 O -0.316 6.316 20 H 0.074 0.926 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.152 0.848 24 H 0.145 0.855 25 H 0.150 0.850 26 H 0.061 0.939 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.614 -12.721 0.735 13.552 hybrid contribution -0.814 0.146 -1.123 1.395 sum 3.800 -12.575 -0.388 13.143 Atomic orbital electron populations 1.69923 1.06067 1.27235 1.49956 1.24952 0.94898 0.99408 0.94575 0.86540 0.79619 0.82345 0.79014 1.20068 1.21146 1.19733 1.20873 0.93113 0.89215 1.51934 0.92224 1.18519 0.92370 0.89534 0.99034 1.20895 0.95202 0.94263 0.90149 1.21292 0.97002 0.94981 0.98379 1.21297 0.96839 0.96827 0.97702 1.21291 0.99709 1.00115 0.91048 1.21163 1.02125 0.99899 0.95762 1.87244 1.36636 1.49183 1.26218 1.20620 1.00429 0.97452 0.95201 1.19780 0.77705 0.81284 0.81679 1.90876 1.48642 1.24059 1.67963 1.84591 1.42581 1.51425 1.53033 0.92632 0.94293 0.95148 0.84816 0.85454 0.85020 0.93902 0.73901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 15 8 H 0.06 1.71 7.74 -52.48 -0.41 1.30 15 9 C 0.04 1.03 4.63 -29.04 -0.13 0.90 15 10 C 0.00 -0.06 5.10 -104.22 -0.53 -0.59 15 11 C -0.10 -1.62 9.65 -39.61 -0.38 -2.01 15 12 C -0.11 -1.43 10.02 -39.55 -0.40 -1.83 15 13 C -0.10 -1.38 9.79 -39.40 -0.39 -1.76 15 14 C -0.08 -1.25 6.16 -38.43 -0.24 -1.48 15 15 S -0.15 -2.19 24.81 -107.50 -2.67 -4.86 15 16 C -0.13 -2.53 5.57 -104.80 -0.58 -3.11 15 17 C 0.56 11.81 5.34 34.39 0.18 12.00 15 18 O -0.43 -11.13 17.95 -19.29 -0.35 -11.48 15 19 O -0.51 -8.92 13.49 -40.70 -0.55 -9.46 15 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 21 H 0.04 0.96 8.05 -51.93 -0.42 0.54 15 22 H 0.03 0.79 7.28 -51.93 -0.38 0.41 15 23 H 0.13 2.04 8.06 -52.49 -0.42 1.62 15 24 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 25 H 0.13 1.43 8.06 -52.49 -0.42 1.00 15 26 H 0.10 1.11 9.55 96.90 0.93 2.04 15 27 H 0.41 4.60 8.96 45.56 0.41 5.01 15 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -33.32 265.27 -7.00 -40.32 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -0.27 Total: 0.61 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.88 Total: -10.86 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.90 Total: -20.94 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.67 Total: -4.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.32 -7.00 -40.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306851381.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.265 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds