Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99851 * 2 1 4 4 H 1.48493 * 109.47001 * 239.99874 * 3 2 1 5 5 H 1.48502 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46958 * 119.99931 * 3 2 1 7 7 C 1.37879 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.37751 * 120.03756 * 265.31540 * 10 9 7 12 12 C 1.38633 * 120.37792 * 180.29880 * 11 10 9 13 13 C 1.37938 * 120.44942 * 359.68145 * 12 11 10 14 14 C 1.39013 * 120.06377 * 359.97438 * 13 12 11 15 15 S 1.76201 * 120.18999 * 180.02562 * 14 13 12 16 16 C 1.39778 * 120.03512 * 84.99920 * 10 9 7 17 17 C 1.47233 * 120.22221 * 359.97438 * 16 10 9 18 18 O 1.21533 * 120.00211 * 269.72605 * 17 16 10 19 19 O 1.34778 * 119.99787 * 89.72736 * 17 16 10 20 20 H 0.96993 * 120.00184 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47733 * 59.99417 * 9 7 2 22 22 H 1.08999 * 109.46791 * 299.99429 * 9 7 2 23 23 H 1.07993 * 119.81309 * 359.97438 * 11 10 9 24 24 H 1.07993 * 119.77190 * 179.70170 * 12 11 10 25 25 H 1.07999 * 119.97203 * 180.02562 * 13 12 11 26 26 H 1.40995 * 100.00077 * 269.97837 * 15 14 13 27 27 H 0.96700 * 117.00264 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6046 -4.2319 -1.1880 12 6 3.5002 -5.2900 -1.1957 13 6 4.0329 -5.7636 -0.0147 14 6 3.6737 -5.1799 1.1947 15 16 4.3527 -5.7818 2.7052 16 6 2.7653 -4.1077 1.2060 17 6 2.3758 -3.4798 2.4795 18 8 3.0151 -2.5427 2.9156 19 8 1.3101 -3.9442 3.1616 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6243 -2.5567 0.8903 23 1 2.1938 -3.8695 -2.1187 24 1 3.7831 -5.7464 -2.1327 25 1 4.7304 -6.5881 -0.0297 26 1 3.3912 -6.7594 3.0335 27 1 0.8332 -4.6914 2.7752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306851381.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = -88.067621 kcal Electronic energy + Delta-G solvation = -14563.474639 eV Core-core repulsion = 11990.539892 eV Total energy + Delta-G solvation = -2572.934747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42323 -39.46244 -37.43096 -35.58698 -33.30389 -32.32057 -29.22510 -25.83745 -25.08501 -23.19954 -22.16270 -19.64175 -18.68543 -18.49257 -17.37337 -17.22370 -16.82571 -16.36069 -15.53947 -15.46000 -14.89442 -14.55197 -14.37753 -13.79078 -13.54219 -13.13949 -12.92813 -12.59986 -12.54324 -12.48211 -12.04321 -11.65292 -11.52476 -11.24437 -10.64366 -9.97927 -9.71162 -9.29584 -8.26929 -6.37145 -0.24344 0.23515 0.54261 1.22011 1.34005 1.39054 1.45887 1.59790 2.35265 2.37200 2.61047 3.06557 3.55460 3.83620 4.08013 4.33288 4.36630 4.50908 4.87614 5.04711 5.15445 5.22433 5.35586 5.66451 5.69761 5.80928 6.07493 6.27533 6.71879 6.77748 7.31332 8.82501 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.008614 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.688681 B = 3249.616860 C = 3658.089245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.045 0.955 9 C 0.052 3.948 10 C -0.032 4.032 11 C -0.103 4.103 12 C -0.084 4.084 13 C -0.084 4.084 14 C -0.079 4.079 15 S -0.170 6.170 16 C -0.150 4.150 17 C 0.562 3.438 18 O -0.495 6.495 19 O -0.508 6.508 20 H 0.266 0.734 21 H 0.027 0.973 22 H 0.003 0.997 23 H 0.141 0.859 24 H 0.176 0.824 25 H 0.172 0.828 26 H 0.131 0.869 27 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 -15.686 -1.917 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.064 0.936 9 C 0.015 3.985 10 C -0.034 4.034 11 C -0.121 4.121 12 C -0.103 4.103 13 C -0.104 4.104 14 C -0.191 4.191 15 S -0.013 6.013 16 C -0.155 4.155 17 C 0.402 3.598 18 O -0.381 6.381 19 O -0.320 6.320 20 H 0.075 0.925 21 H 0.045 0.955 22 H 0.021 0.979 23 H 0.159 0.841 24 H 0.193 0.807 25 H 0.190 0.810 26 H 0.096 0.904 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.965 -14.868 -0.538 16.029 hybrid contribution -1.260 0.614 -0.698 1.566 sum 4.704 -14.254 -1.236 15.061 Atomic orbital electron populations 1.70012 1.07210 1.28020 1.51076 1.25745 0.95754 1.02669 0.94491 0.85684 0.78659 0.78973 0.78966 1.18383 1.19965 1.20840 1.21178 0.92695 0.91291 1.51193 0.93624 1.18199 0.92805 0.90510 0.96986 1.20482 0.96268 0.94498 0.92189 1.21443 0.97710 0.95803 0.97165 1.21748 0.94243 0.94686 0.99667 1.21816 0.98791 1.00002 0.89776 1.21323 1.01097 0.99128 0.97534 1.87328 1.37471 1.50210 1.26242 1.20432 1.02390 0.99171 0.93500 1.20187 0.77269 0.80330 0.82024 1.90826 1.50881 1.26703 1.69695 1.84494 1.41835 1.52527 1.53178 0.92479 0.95481 0.97900 0.84077 0.80691 0.81050 0.90403 0.70931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.29 21.45 0.28 -55.39 15 2 C 0.01 0.72 5.46 84.65 0.46 1.18 15 3 Si 0.95 46.37 29.54 68.60 2.03 48.40 15 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.27 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.28 -14.14 7.11 99.48 0.71 -13.43 15 7 C -0.53 -30.42 9.09 25.60 0.23 -30.18 15 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 15 9 C 0.05 2.64 4.63 29.10 0.13 2.77 15 10 C -0.03 -1.30 5.10 -19.61 -0.10 -1.40 15 11 C -0.10 -3.19 9.65 22.25 0.21 -2.97 15 12 C -0.08 -1.85 10.02 22.29 0.22 -1.63 15 13 C -0.08 -1.88 9.79 22.38 0.22 -1.67 15 14 C -0.08 -2.34 6.16 23.02 0.14 -2.20 15 15 S -0.17 -4.55 24.81 -56.49 -1.40 -5.95 15 16 C -0.15 -5.69 5.57 -19.98 -0.11 -5.80 15 17 C 0.56 24.38 5.34 70.19 0.37 24.75 15 18 O -0.50 -26.50 17.95 19.73 0.35 -26.15 15 19 O -0.51 -18.16 13.49 -56.89 -0.77 -18.93 15 20 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 21 H 0.03 1.39 8.05 -2.39 -0.02 1.37 15 22 H 0.00 0.15 7.28 -2.39 -0.02 0.14 15 23 H 0.14 4.06 8.06 -2.91 -0.02 4.04 15 24 H 0.18 2.28 8.06 -2.91 -0.02 2.26 15 25 H 0.17 2.59 8.06 -2.91 -0.02 2.57 15 26 H 0.13 2.58 9.55 73.80 0.70 3.29 15 27 H 0.43 9.67 8.96 -74.06 -0.66 9.01 15 Total: -1.00 -75.60 265.27 3.55 -72.05 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.26 Total: 3.10 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 1.79 Total: -17.13 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.41 Total: -45.08 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.40 Total: -5.95 kcal Total: -75.60 3.55 -72.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306851381.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.018 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds