Wall clock time and date at job start Mon Mar 30 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31103 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48501 * 109.47300 * 274.05192 * 3 2 1 5 5 H 1.48495 * 109.47260 * 34.05616 * 3 2 1 6 6 H 1.48503 * 109.47036 * 154.05546 * 3 2 1 7 7 C 1.39661 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00147 * 341.32234 * 7 2 1 9 9 C 1.40814 * 120.00077 * 161.32800 * 7 2 1 10 10 C 1.36489 * 123.29638 * 336.34806 * 9 7 2 11 11 S 1.69973 * 111.92902 * 180.21053 * 10 9 7 12 12 C 1.75803 * 93.22864 * 359.69249 * 11 10 9 13 13 C 1.39870 * 130.14392 * 180.09038 * 12 11 10 14 14 C 1.37885 * 120.47306 * 180.23010 * 13 12 11 15 15 F 1.35100 * 119.90385 * 179.97438 * 14 13 12 16 16 C 1.38752 * 120.19535 * 359.97438 * 14 13 12 17 17 C 1.37976 * 120.16790 * 0.03566 * 16 14 13 18 18 O 1.35824 * 119.87868 * 179.97438 * 17 16 14 19 19 C 1.39272 * 110.18308 * 0.30412 * 12 11 10 20 20 H 0.96995 * 119.99984 * 0.02562 * 1 2 3 21 21 H 1.08001 * 124.03327 * 359.93848 * 10 9 7 22 22 H 1.08003 * 119.76216 * 0.25050 * 13 12 11 23 23 H 1.08000 * 119.91616 * 180.02562 * 16 14 13 24 24 H 0.96699 * 114.00212 * 269.93397 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.4068 2.0960 -1.3966 5 1 1.4879 2.6264 0.7840 6 1 3.5828 1.4170 0.6125 7 6 2.0093 -1.2095 0.0005 8 1 1.5120 -2.1200 0.3005 9 6 3.3619 -1.2418 -0.3899 10 6 3.9309 -0.3013 -1.1989 11 16 5.5743 -0.6239 -1.4890 12 6 5.5668 -2.0755 -0.4973 13 6 6.5990 -2.9727 -0.2041 14 6 6.3676 -4.0646 0.6054 15 9 7.3729 -4.9241 0.8807 16 6 5.1052 -4.2833 1.1382 17 6 4.0743 -3.4094 0.8600 18 8 2.8408 -3.6294 1.3842 19 6 4.2968 -2.2885 0.0332 20 1 -0.4850 0.8400 -0.0004 21 1 3.3992 0.5444 -1.6095 22 1 7.5845 -2.8088 -0.6145 23 1 4.9291 -5.1398 1.7720 24 1 2.2675 -4.1725 0.8263 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306853612.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:18 Heat of formation + Delta-G solvation = -56.770501 kcal Electronic energy + Delta-G solvation = -14195.352467 eV Core-core repulsion = 11500.314559 eV Total energy + Delta-G solvation = -2695.037907 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.58418 -39.24680 -36.20744 -34.94303 -32.66697 -29.69903 -28.30030 -25.93209 -22.79064 -22.24239 -19.90609 -18.53934 -16.95933 -16.69945 -16.00669 -15.71277 -15.27583 -14.91603 -14.65037 -13.93303 -13.35122 -13.08526 -12.57255 -12.51900 -12.23451 -11.52413 -11.30673 -10.92853 -10.77864 -10.29002 -9.87397 -9.74165 -9.68275 -9.26706 -8.67207 -7.68533 -7.03443 -6.98618 -4.50916 1.34538 1.51134 2.45910 2.92861 3.14958 3.21911 3.38650 3.49847 3.95178 3.99551 4.47533 4.91786 5.05106 5.29789 5.35626 5.66341 5.90559 6.30623 6.39627 6.47858 6.63249 6.90371 7.10060 7.31153 7.52505 8.14696 8.22977 8.34318 8.69790 9.97519 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.031865 B = 0.009948 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.497333 B = 2813.956992 C = 3537.533443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.085 3.915 3 Si 0.917 3.083 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.404 4.404 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.467 4.467 11 S 0.082 5.918 12 C -0.098 4.098 13 C -0.146 4.146 14 C 0.114 3.886 15 F -0.144 7.144 16 C -0.210 4.210 17 C 0.186 3.814 18 O -0.481 6.481 19 C -0.097 4.097 20 H 0.287 0.713 21 H 0.140 0.860 22 H 0.130 0.870 23 H 0.136 0.864 24 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 -4.182 -0.243 8.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.434 4.434 8 H 0.118 0.882 9 C 0.082 3.918 10 C -0.601 4.601 11 S 0.346 5.654 12 C -0.214 4.214 13 C -0.171 4.171 14 C 0.092 3.908 15 F -0.123 7.123 16 C -0.233 4.233 17 C 0.139 3.861 18 O -0.291 6.291 19 C -0.108 4.108 20 H 0.097 0.903 21 H 0.157 0.843 22 H 0.148 0.852 23 H 0.154 0.846 24 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.983 -2.933 -0.638 8.529 hybrid contribution -1.034 -0.280 0.497 1.181 sum 6.950 -3.213 -0.141 7.658 Atomic orbital electron populations 1.69784 1.07968 1.30462 1.34444 1.26140 0.94779 1.01881 0.90712 0.86136 0.81308 0.79357 0.78711 1.19990 1.22238 1.16433 1.19063 0.92121 0.96543 1.35699 0.88232 1.17357 0.93097 0.89249 0.92069 1.23617 0.98542 1.14241 1.23716 1.81743 1.11464 1.19735 1.52505 1.22353 0.95786 1.00454 1.02838 1.20196 0.99047 0.94953 1.02912 1.16962 0.84696 0.89619 0.99507 1.91450 1.59442 1.68855 1.92553 1.20894 0.92346 1.02864 1.07198 1.17906 0.85469 0.91299 0.91428 1.84787 1.22595 1.74511 1.47234 1.19901 0.93705 0.98023 0.99177 0.90305 0.84317 0.85219 0.84644 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 13.94 55.54 0.77 -20.18 14 2 C 0.08 2.20 5.46 -17.33 -0.09 2.10 14 3 Si 0.92 21.18 24.56 -169.99 -4.17 17.00 14 4 H -0.27 -6.18 6.67 56.52 0.38 -5.80 14 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 14 6 H -0.24 -5.76 6.75 56.52 0.38 -5.38 14 7 C -0.40 -10.55 9.20 -38.08 -0.35 -10.90 14 8 H 0.10 2.61 6.49 -52.49 -0.34 2.27 14 9 C 0.09 2.27 5.32 -106.19 -0.56 1.70 14 10 C -0.47 -11.23 8.05 30.10 0.24 -10.99 14 11 S 0.08 1.68 22.96 -107.50 -2.47 -0.79 14 12 C -0.10 -2.01 6.44 -38.59 -0.25 -2.26 14 13 C -0.15 -2.59 10.04 -39.10 -0.39 -2.98 14 14 C 0.11 1.95 7.28 -39.52 -0.29 1.67 14 15 F -0.14 -2.31 17.26 2.25 0.04 -2.27 14 16 C -0.21 -3.61 9.93 -39.49 -0.39 -4.01 14 17 C 0.19 3.67 6.75 -38.61 -0.26 3.41 14 18 O -0.48 -9.03 11.49 -19.19 -0.22 -9.26 14 19 C -0.10 -2.18 6.04 -105.08 -0.63 -2.81 14 20 H 0.29 6.82 8.30 -40.82 -0.34 6.48 14 21 H 0.14 3.40 4.43 -52.49 -0.23 3.17 14 22 H 0.13 1.97 8.06 -52.48 -0.42 1.55 14 23 H 0.14 1.99 8.06 -52.49 -0.42 1.57 14 24 H 0.39 5.62 8.93 45.56 0.41 6.03 14 LS Contribution 229.51 15.07 3.46 3.46 Total: -1.00 -27.61 229.51 -5.77 -33.37 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -0.19 Total: 3.73 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.98 Total: -25.07 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.77 Total: -20.18 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.22 Total: -9.26 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.17 Total: 17.00 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.61 -5.77 -33.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306853612.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.396 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds