Wall clock time and date at job start Mon Mar 30 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48504 * 109.47075 * 270.00067 * 3 2 1 5 5 H 1.48502 * 109.47160 * 29.99963 * 3 2 1 6 6 H 1.48497 * 109.47203 * 150.00027 * 3 2 1 7 7 C 1.39918 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99632 * 197.83891 * 7 2 1 9 9 C 1.40552 * 120.00119 * 17.84021 * 7 2 1 10 10 C 1.40284 * 120.36694 * 24.86260 * 9 7 2 11 11 C 1.37988 * 120.08708 * 179.97438 * 10 9 7 12 12 O 1.35923 * 119.51490 * 179.97438 * 11 10 9 13 13 C 1.38771 * 120.96956 * 359.97438 * 11 10 9 14 14 C 1.39397 * 121.42216 * 0.27424 * 13 11 10 15 15 S 1.76075 * 130.51868 * 180.34718 * 14 13 11 16 16 C 1.75504 * 91.53679 * 179.51938 * 15 14 13 17 17 F 1.35098 * 124.67880 * 179.81788 * 16 15 14 18 18 C 1.33156 * 110.64260 * 359.81114 * 16 15 14 19 19 C 1.39859 * 120.10957 * 359.46982 * 14 13 11 20 20 H 0.97001 * 120.00360 * 359.97438 * 1 2 3 21 21 H 1.07993 * 119.95873 * 359.97438 * 10 9 7 22 22 H 0.96692 * 114.00350 * 270.03088 * 12 11 10 23 23 H 1.08007 * 119.28674 * 179.97438 * 13 11 10 24 24 H 1.08000 * 122.13018 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7000 7 6 2.0084 -1.2117 0.0005 8 1 3.0495 -1.2340 0.2871 9 6 1.3564 -2.3999 -0.3718 10 6 0.2342 -2.3594 -1.2127 11 6 -0.4012 -3.5295 -1.5750 12 8 -1.4878 -3.4768 -2.3899 13 6 0.0529 -4.7592 -1.1198 14 6 1.1598 -4.8591 -0.2783 15 16 1.9369 -6.2730 0.4267 16 6 3.1372 -5.2731 1.2266 17 9 4.1309 -5.7443 2.0111 18 6 2.9333 -3.9859 0.9533 19 6 1.8465 -3.7067 0.1174 20 1 -0.4851 0.8400 0.0004 21 1 -0.1329 -1.4114 -1.5769 22 1 -2.3286 -3.3939 -1.9195 23 1 -0.4653 -5.6580 -1.4201 24 1 3.5662 -3.2068 1.3519 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306864397.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:53 Heat of formation + Delta-G solvation = -57.464017 kcal Electronic energy + Delta-G solvation = -13991.053213 eV Core-core repulsion = 11295.985232 eV Total energy + Delta-G solvation = -2695.067981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.11698 -38.53176 -36.51282 -34.55578 -32.50878 -30.02372 -27.29933 -25.40873 -22.73148 -21.33258 -19.87442 -18.44828 -17.03387 -16.64082 -15.55689 -15.34805 -15.00516 -14.81390 -14.35736 -13.67135 -13.36724 -13.01340 -12.31244 -12.11719 -11.74424 -11.61981 -11.33271 -10.94078 -10.59112 -10.43442 -10.10998 -9.75868 -9.46504 -9.34007 -8.49626 -7.34658 -7.21805 -6.93798 -4.70947 1.56658 2.06629 2.46459 2.67754 2.85805 2.90047 2.94328 3.23120 3.61065 4.13471 5.06069 5.26312 5.33600 6.01722 6.31451 6.42087 6.60943 6.67186 6.69241 6.88214 7.01317 7.40947 7.47285 7.56089 7.75418 8.02095 8.33051 8.37542 8.68299 9.66058 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.009902 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.879419 B = 2827.146560 C = 3995.075354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.418 4.418 8 H 0.092 0.908 9 C 0.164 3.836 10 C -0.211 4.211 11 C 0.158 3.842 12 O -0.511 6.511 13 C -0.253 4.253 14 C -0.050 4.050 15 S 0.028 5.972 16 C -0.090 4.090 17 F -0.124 7.124 18 C -0.075 4.075 19 C -0.192 4.192 20 H 0.291 0.709 21 H 0.132 0.868 22 H 0.379 0.621 23 H 0.101 0.899 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -0.903 0.388 0.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.444 4.444 8 H 0.110 0.890 9 C 0.159 3.841 10 C -0.233 4.233 11 C 0.112 3.888 12 O -0.321 6.321 13 C -0.279 4.279 14 C -0.166 4.166 15 S 0.286 5.714 16 C -0.222 4.222 17 F -0.103 7.103 18 C -0.106 4.106 19 C -0.197 4.197 20 H 0.103 0.897 21 H 0.149 0.851 22 H 0.234 0.766 23 H 0.119 0.881 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.158 -2.362 0.019 2.367 hybrid contribution 0.355 2.049 0.668 2.185 sum 0.513 -0.312 0.687 0.912 Atomic orbital electron populations 1.69827 1.07950 1.30656 1.29582 1.26152 0.94957 1.02248 0.91852 0.86080 0.80537 0.79120 0.79950 1.18620 1.19733 1.18015 1.19713 0.98611 0.90813 1.35289 0.89047 1.18208 0.89621 0.89137 0.87180 1.21234 1.01665 0.96937 1.03480 1.18012 0.88382 0.92010 0.90446 1.84701 1.15993 1.96242 1.35118 1.19608 1.02378 0.96651 1.09294 1.21808 0.99534 0.93684 1.01531 1.83665 1.26724 1.09409 1.51608 1.20929 0.97641 0.94709 1.08950 1.91363 1.58156 1.88388 1.72415 1.19846 0.98277 0.94080 0.98375 1.18654 1.00346 0.93711 1.06994 0.89750 0.85085 0.76642 0.88098 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.23 10.97 55.55 0.61 -16.62 14 2 C 0.07 1.57 5.13 -17.33 -0.09 1.48 14 3 Si 0.92 16.49 29.60 -169.99 -5.03 11.46 14 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 14 6 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14 7 C -0.42 -9.92 8.81 -38.08 -0.34 -10.26 14 8 H 0.09 2.06 7.50 -52.49 -0.39 1.67 14 9 C 0.16 4.08 5.75 -104.30 -0.60 3.48 14 10 C -0.21 -5.14 8.58 -38.90 -0.33 -5.47 14 11 C 0.16 3.59 6.66 -39.48 -0.26 3.32 14 12 O -0.51 -10.09 13.47 -19.50 -0.26 -10.35 14 13 C -0.25 -5.67 9.94 -38.95 -0.39 -6.05 14 14 C -0.05 -1.16 6.48 -38.54 -0.25 -1.40 14 15 S 0.03 0.57 23.29 -107.50 -2.50 -1.94 14 16 C -0.09 -1.92 8.29 28.96 0.24 -1.68 14 17 F -0.12 -2.50 17.32 2.25 0.04 -2.46 14 18 C -0.07 -1.65 9.77 -40.72 -0.40 -2.05 14 19 C -0.19 -4.60 6.02 -104.70 -0.63 -5.23 14 20 H 0.29 5.91 8.30 -40.82 -0.34 5.57 14 21 H 0.13 3.24 6.16 -52.49 -0.32 2.92 14 22 H 0.38 5.60 9.06 45.56 0.41 6.01 14 23 H 0.10 2.08 8.06 -52.48 -0.42 1.65 14 24 H 0.14 2.80 7.71 -52.49 -0.40 2.39 14 LS Contribution 238.20 15.07 3.59 3.59 Total: -1.00 -25.90 238.20 -6.87 -32.77 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -0.27 Total: 7.41 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -3.05 Total: -23.86 kcal Atomic # 7 Polarization: -17.23 SS G_CDS: 0.61 Total: -16.62 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.26 Total: -10.35 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.50 Total: -1.94 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -25.90 -6.87 -32.77 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306864397.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.694 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds