Wall clock time and date at job start Mon Mar 30 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48504 * 109.46761 * 269.99959 * 3 2 1 5 5 H 1.48496 * 109.47126 * 29.99489 * 3 2 1 6 6 H 1.48493 * 109.47097 * 150.00220 * 3 2 1 7 7 C 1.39826 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 162.45024 * 7 2 1 9 9 C 1.41257 * 120.00245 * 342.44613 * 7 2 1 10 10 C 1.39994 * 120.04022 * 334.49445 * 9 7 2 11 11 C 1.40591 * 120.08324 * 180.02562 * 10 9 7 12 12 C 1.45565 * 129.12072 * 180.02562 * 11 10 9 13 13 C 1.32034 * 114.82111 * 179.97438 * 12 11 10 14 14 F 1.35103 * 124.26672 * 179.97438 * 13 12 11 15 15 S 1.75251 * 111.46527 * 0.02562 * 13 12 11 16 16 C 1.40056 * 119.06313 * 359.97438 * 11 10 9 17 17 C 1.40842 * 120.14279 * 0.02562 * 16 11 10 18 18 O 1.35926 * 119.62869 * 180.02562 * 17 16 11 19 19 C 1.36174 * 120.74730 * 359.97438 * 17 16 11 20 20 H 0.96994 * 119.99936 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.95552 * 0.04190 * 10 9 7 22 22 H 1.07996 * 122.59066 * 359.95189 * 12 11 10 23 23 H 0.96697 * 114.00225 * 269.97303 * 18 17 16 24 24 H 1.07995 * 119.98382 * 180.28220 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4406 2.6527 0.6999 6 1 3.5406 1.4401 0.7000 7 6 2.0082 -1.2109 0.0005 8 1 3.0505 -1.2329 -0.2815 9 6 1.3513 -2.4056 0.3700 10 6 0.2365 -2.3598 1.2155 11 6 -0.4177 -3.5483 1.5843 12 6 -1.5803 -3.7289 2.4415 13 6 -1.9636 -4.9826 2.5986 14 9 -3.0167 -5.3672 3.3525 15 16 -0.9332 -6.0848 1.7072 16 6 0.0621 -4.7693 1.0938 17 6 1.1849 -4.7981 0.2441 18 8 1.6413 -5.9888 -0.2263 19 6 1.8178 -3.6463 -0.1125 20 1 -0.4850 0.8400 0.0004 21 1 -0.1216 -1.4101 1.5848 22 1 -2.0897 -2.9015 2.9127 23 1 2.3037 -6.4077 0.3402 24 1 2.6749 -3.6822 -0.7684 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306866243.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:35 Heat of formation + Delta-G solvation = -55.419432 kcal Electronic energy + Delta-G solvation = -13917.757192 eV Core-core repulsion = 11222.777871 eV Total energy + Delta-G solvation = -2694.979321 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.52564 -38.67959 -36.40186 -34.79297 -32.59988 -29.03934 -28.01851 -25.63262 -22.45440 -21.50387 -20.15891 -18.33696 -17.34211 -16.20917 -15.56681 -15.42535 -15.34063 -15.33315 -14.23139 -13.84551 -13.40009 -12.91551 -12.42429 -12.07315 -11.67414 -11.56484 -11.24395 -10.86692 -10.50034 -10.45770 -10.03050 -9.88341 -9.68077 -9.20355 -8.46171 -7.55701 -6.99473 -6.87007 -4.58339 1.53727 1.87317 2.37786 2.75920 2.90566 2.97023 3.01551 3.14323 3.77219 4.29316 4.87515 4.99695 5.31684 5.86527 6.05376 6.21365 6.47269 6.64418 6.83772 6.93995 7.06600 7.18610 7.44659 7.63752 7.82884 8.22631 8.39525 8.59601 8.63032 9.95017 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.032395 B = 0.007880 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.127058 B = 3552.470242 C = 4335.558288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.085 0.915 9 C 0.119 3.881 10 C -0.141 4.141 11 C -0.032 4.032 12 C -0.137 4.137 13 C -0.009 4.009 14 F -0.119 7.119 15 S 0.045 5.955 16 C -0.256 4.256 17 C 0.154 3.846 18 O -0.507 6.507 19 C -0.201 4.201 20 H 0.286 0.714 21 H 0.129 0.871 22 H 0.142 0.858 23 H 0.375 0.625 24 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -3.156 3.115 4.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.479 4.479 8 H 0.103 0.897 9 C 0.115 3.885 10 C -0.163 4.163 11 C -0.037 4.037 12 C -0.171 4.171 13 C -0.142 4.142 14 F -0.098 7.098 15 S 0.301 5.699 16 C -0.371 4.371 17 C 0.106 3.894 18 O -0.316 6.316 19 C -0.223 4.223 20 H 0.097 0.903 21 H 0.146 0.854 22 H 0.160 0.840 23 H 0.229 0.771 24 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.090 -4.440 2.527 5.110 hybrid contribution 0.238 2.076 0.640 2.186 sum 0.328 -2.364 3.167 3.966 Atomic orbital electron populations 1.69835 1.07671 1.29888 1.33270 1.25968 0.94821 1.01696 0.92071 0.86225 0.80615 0.80056 0.79455 1.19270 1.19891 1.18234 1.19557 0.98258 0.90868 1.39195 0.89724 1.17254 0.90953 0.91717 0.88610 1.21198 0.99115 0.94889 1.01138 1.18506 0.94342 0.93524 0.97328 1.21205 0.98682 0.95400 1.01783 1.21325 0.93196 0.96816 1.02830 1.91433 1.53449 1.91302 1.73602 1.83654 1.27060 1.08731 1.50420 1.22072 1.06591 0.94629 1.13781 1.17134 0.92593 0.84724 0.94953 1.84799 1.61395 1.34613 1.50758 1.20974 1.03786 0.91901 1.05597 0.90342 0.85371 0.83988 0.77091 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.88 10.99 55.54 0.61 -18.27 14 2 C 0.07 1.72 5.12 -17.35 -0.09 1.63 14 3 Si 0.91 17.23 29.59 -169.99 -5.03 12.20 14 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 7 C -0.45 -10.94 9.03 -37.84 -0.34 -11.28 14 8 H 0.08 1.94 7.90 -52.48 -0.41 1.53 14 9 C 0.12 2.94 5.55 -107.03 -0.59 2.34 14 10 C -0.14 -3.47 8.75 -38.04 -0.33 -3.80 14 11 C -0.03 -0.74 6.03 -105.41 -0.64 -1.37 14 12 C -0.14 -2.82 10.40 -38.58 -0.40 -3.22 14 13 C -0.01 -0.18 8.18 28.81 0.24 0.05 14 14 F -0.12 -2.18 17.32 2.25 0.04 -2.15 14 15 S 0.05 0.88 23.20 -107.50 -2.49 -1.61 14 16 C -0.26 -5.74 6.45 -37.92 -0.24 -5.99 14 17 C 0.15 3.40 6.67 -39.34 -0.26 3.14 14 18 O -0.51 -9.67 13.45 -19.51 -0.26 -9.93 14 19 C -0.20 -4.63 9.62 -39.26 -0.38 -5.00 14 20 H 0.29 6.24 8.30 -40.82 -0.34 5.90 14 21 H 0.13 3.21 6.17 -52.49 -0.32 2.88 14 22 H 0.14 2.60 8.06 -52.49 -0.42 2.18 14 23 H 0.38 5.23 9.06 45.56 0.41 5.64 14 24 H 0.11 2.41 8.06 -52.49 -0.42 1.99 14 LS Contribution 239.23 15.07 3.61 3.61 Total: -1.00 -26.38 239.23 -6.88 -33.26 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -0.31 Total: 6.39 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.04 Total: -23.50 kcal Atomic # 7 Polarization: -18.88 SS G_CDS: 0.61 Total: -18.27 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.26 Total: -9.93 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.38 -6.88 -33.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306866243.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.161 kcal (2) G-P(sol) polarization free energy of solvation -26.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds