Wall clock time and date at job start Mon Mar 30 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48501 * 109.47213 * 274.98272 * 3 2 1 5 5 H 1.48500 * 109.47038 * 34.98919 * 3 2 1 6 6 H 1.48507 * 109.46859 * 154.98406 * 3 2 1 7 7 C 1.40081 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99582 * 186.61426 * 7 2 1 9 9 C 1.39873 * 119.99838 * 6.61581 * 7 2 1 10 10 C 1.37017 * 124.83787 * 173.30418 * 9 7 2 11 11 C 1.39613 * 115.04384 * 179.75470 * 10 9 7 12 12 C 1.40356 * 112.92792 * 0.43676 * 11 10 9 13 13 C 1.39460 * 119.91619 * 179.76221 * 12 11 10 14 14 C 1.38094 * 120.55035 * 359.76006 * 13 12 11 15 15 F 1.35102 * 119.86632 * 179.97438 * 14 13 12 16 16 C 1.38957 * 120.26234 * 359.96260 * 14 13 12 17 17 C 1.37534 * 120.40241 * 0.02562 * 16 14 13 18 18 O 1.35731 * 119.86981 * 180.02562 * 17 16 14 19 19 S 1.75456 * 124.84121 * 353.29881 * 9 7 2 20 20 H 0.97002 * 120.00367 * 0.02562 * 1 2 3 21 21 H 1.07999 * 122.48165 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.72031 * 179.74335 * 13 12 11 23 23 H 1.08001 * 119.80097 * 180.02562 * 16 14 13 24 24 H 0.96699 * 114.00027 * 89.99525 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.3844 2.1074 -1.3948 5 1 1.4963 2.6200 0.8028 6 1 3.5885 1.4122 0.5921 7 6 2.0088 -1.2131 0.0005 8 1 3.0834 -1.2160 0.1083 9 6 1.3164 -2.4205 -0.1385 10 6 1.9062 -3.6489 -0.2819 11 6 1.0189 -4.7204 -0.3994 12 6 -0.3267 -4.3232 -0.3567 13 6 -1.3374 -5.2778 -0.4665 14 6 -1.0268 -6.6143 -0.6224 15 9 -2.0170 -7.5274 -0.7269 16 6 0.3002 -7.0236 -0.6725 17 6 1.3169 -6.1034 -0.5669 18 8 2.6093 -6.5151 -0.6177 19 16 -0.4310 -2.5780 -0.1539 20 1 -0.4851 0.8400 -0.0004 21 1 2.9782 -3.7793 -0.2983 22 1 -2.3717 -4.9692 -0.4290 23 1 0.5347 -8.0707 -0.7950 24 1 2.9819 -6.5318 -1.5099 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306876414.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:20 Heat of formation + Delta-G solvation = -76.945529 kcal Electronic energy + Delta-G solvation = -13844.228127 eV Core-core repulsion = 11148.315365 eV Total energy + Delta-G solvation = -2695.912762 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.01257 -38.71906 -35.92752 -34.95315 -33.01501 -29.28063 -28.67191 -25.26356 -22.68627 -21.61195 -19.48804 -18.52524 -17.51425 -16.03441 -15.76043 -15.31608 -14.90173 -14.74355 -14.33658 -13.71466 -13.31099 -12.87853 -12.52682 -12.22860 -11.68467 -11.57258 -11.39132 -10.96437 -10.66869 -10.38067 -10.27510 -9.90804 -9.37691 -9.18170 -8.48221 -7.46830 -7.33711 -6.54552 -4.79501 1.73784 2.05237 2.70169 2.77781 2.84669 3.05940 3.37446 3.47357 3.66765 4.31882 4.75264 4.96495 5.42325 5.64233 5.77604 6.29992 6.44229 6.53311 6.77344 6.87491 7.01433 7.22336 7.33755 7.55838 7.68160 7.79832 8.09823 8.24651 8.42613 9.50612 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.044244 B = 0.007287 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.701141 B = 3841.677165 C = 4457.808707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.051 3.949 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.375 4.375 8 H 0.102 0.898 9 C 0.052 3.948 10 C -0.351 4.351 11 C -0.004 4.004 12 C -0.242 4.242 13 C -0.085 4.085 14 C 0.017 3.983 15 F -0.158 7.158 16 C -0.160 4.160 17 C 0.082 3.918 18 O -0.494 6.494 19 S 0.155 5.845 20 H 0.304 0.696 21 H 0.112 0.888 22 H 0.116 0.884 23 H 0.121 0.879 24 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -0.475 -1.814 1.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.409 4.409 8 H 0.120 0.880 9 C -0.068 4.068 10 C -0.375 4.375 11 C -0.013 4.013 12 C -0.357 4.357 13 C -0.108 4.108 14 C -0.004 4.004 15 F -0.138 7.138 16 C -0.181 4.181 17 C 0.036 3.964 18 O -0.302 6.302 19 S 0.416 5.584 20 H 0.117 0.883 21 H 0.130 0.870 22 H 0.134 0.866 23 H 0.139 0.861 24 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.038 0.626 -1.069 1.616 hybrid contribution 1.395 -0.555 -0.665 1.642 sum 0.357 0.071 -1.734 1.772 Atomic orbital electron populations 1.68647 1.07852 1.31388 1.31913 1.26375 0.95165 1.03241 0.92284 0.85691 0.80207 0.77986 0.79717 1.18724 1.19446 1.17847 1.19382 0.96341 0.88651 1.36488 0.87978 1.21496 0.94804 0.95941 0.94535 1.19518 0.98152 0.90151 1.29672 1.18305 0.92515 0.92483 0.98019 1.23352 0.95230 1.02769 1.14327 1.20073 0.98213 0.90312 1.02207 1.16788 0.84122 0.85934 1.13580 1.91364 1.60999 1.66491 1.94907 1.20624 0.91123 0.99458 1.06920 1.17983 0.82697 0.89676 1.06056 1.84757 1.24326 1.88510 1.32609 1.84891 1.05289 0.91374 1.76883 0.88302 0.87014 0.86553 0.86131 0.77242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.22 10.62 55.56 0.59 -16.63 14 2 C 0.05 1.12 5.49 -17.29 -0.09 1.02 14 3 Si 0.94 16.11 29.57 -169.99 -5.03 11.09 14 4 H -0.26 -4.45 7.11 56.52 0.40 -4.05 14 5 H -0.27 -4.50 7.11 56.52 0.40 -4.10 14 6 H -0.26 -4.32 7.11 56.52 0.40 -3.92 14 7 C -0.37 -8.88 9.25 -38.28 -0.35 -9.23 14 8 H 0.10 2.28 7.86 -52.49 -0.41 1.87 14 9 C 0.05 1.30 6.11 -39.41 -0.24 1.06 14 10 C -0.35 -8.71 9.97 -39.51 -0.39 -9.11 14 11 C 0.00 -0.11 5.87 -106.96 -0.63 -0.73 14 12 C -0.24 -5.73 6.46 -38.33 -0.25 -5.98 14 13 C -0.08 -1.83 10.03 -39.18 -0.39 -2.22 14 14 C 0.02 0.36 7.30 -39.37 -0.29 0.07 14 15 F -0.16 -3.14 17.26 2.25 0.04 -3.10 14 16 C -0.16 -3.26 9.90 -39.57 -0.39 -3.65 14 17 C 0.08 1.78 6.78 -38.21 -0.26 1.53 14 18 O -0.49 -9.54 13.34 -18.90 -0.25 -9.79 14 19 S 0.16 3.69 20.16 -107.50 -2.17 1.52 14 20 H 0.30 6.01 8.30 -40.82 -0.34 5.67 14 21 H 0.11 2.69 8.06 -52.49 -0.42 2.27 14 22 H 0.12 2.26 8.06 -52.49 -0.42 1.84 14 23 H 0.12 2.15 8.06 -52.49 -0.42 1.73 14 24 H 0.37 5.34 9.06 45.56 0.41 5.75 14 LS Contribution 238.83 15.07 3.60 3.60 Total: -1.00 -26.59 238.83 -6.91 -33.50 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -0.40 Total: 7.05 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -3.29 Total: -27.24 kcal Atomic # 7 Polarization: -17.22 SS G_CDS: 0.59 Total: -16.63 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.25 Total: -9.79 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.03 Total: 11.09 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.17 Total: 1.52 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.59 -6.91 -33.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306876414.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.447 kcal (2) G-P(sol) polarization free energy of solvation -26.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds