Wall clock time and date at job start Mon Mar 30 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48501 * 109.47213 * 274.98272 * 3 2 1 5 5 H 1.48500 * 109.47038 * 34.98919 * 3 2 1 6 6 H 1.48507 * 109.46859 * 154.98406 * 3 2 1 7 7 C 1.40081 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99582 * 186.61426 * 7 2 1 9 9 C 1.39873 * 119.99838 * 6.61581 * 7 2 1 10 10 C 1.37017 * 124.83787 * 173.30418 * 9 7 2 11 11 C 1.39613 * 115.04384 * 179.75470 * 10 9 7 12 12 C 1.40356 * 112.92792 * 0.43676 * 11 10 9 13 13 C 1.39460 * 119.91619 * 179.76221 * 12 11 10 14 14 C 1.38094 * 120.55035 * 359.76006 * 13 12 11 15 15 F 1.35102 * 119.86632 * 179.97438 * 14 13 12 16 16 C 1.38957 * 120.26234 * 359.96260 * 14 13 12 17 17 C 1.37534 * 120.40241 * 0.02562 * 16 14 13 18 18 O 1.35731 * 119.86981 * 180.02562 * 17 16 14 19 19 S 1.75456 * 124.84121 * 353.29881 * 9 7 2 20 20 H 0.97002 * 120.00367 * 0.02562 * 1 2 3 21 21 H 1.07999 * 122.48165 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.72031 * 179.74335 * 13 12 11 23 23 H 1.08001 * 119.80097 * 180.02562 * 16 14 13 24 24 H 0.96699 * 114.00027 * 89.99525 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.3844 2.1074 -1.3948 5 1 1.4963 2.6200 0.8028 6 1 3.5885 1.4122 0.5921 7 6 2.0088 -1.2131 0.0005 8 1 3.0834 -1.2160 0.1083 9 6 1.3164 -2.4205 -0.1385 10 6 1.9062 -3.6489 -0.2819 11 6 1.0189 -4.7204 -0.3994 12 6 -0.3267 -4.3232 -0.3567 13 6 -1.3374 -5.2778 -0.4665 14 6 -1.0268 -6.6143 -0.6224 15 9 -2.0170 -7.5274 -0.7269 16 6 0.3002 -7.0236 -0.6725 17 6 1.3169 -6.1034 -0.5669 18 8 2.6093 -6.5151 -0.6177 19 16 -0.4310 -2.5780 -0.1539 20 1 -0.4851 0.8400 -0.0004 21 1 2.9782 -3.7793 -0.2983 22 1 -2.3717 -4.9692 -0.4290 23 1 0.5347 -8.0707 -0.7950 24 1 2.9819 -6.5318 -1.5099 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306876414.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:19 Heat of formation + Delta-G solvation = -92.438712 kcal Electronic energy + Delta-G solvation = -13844.899962 eV Core-core repulsion = 11148.315365 eV Total energy + Delta-G solvation = -2696.584597 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.64638 -40.39630 -37.56662 -36.65986 -34.73715 -30.98470 -30.39703 -27.00903 -24.41873 -23.30274 -21.24018 -20.22330 -19.20742 -17.69497 -17.39044 -16.92973 -16.61348 -16.37671 -15.97931 -15.35155 -14.89039 -14.48372 -14.22412 -13.96791 -13.32117 -13.10950 -13.04477 -12.69617 -12.10674 -11.97916 -11.87677 -11.60915 -11.05916 -10.95506 -10.20744 -9.24241 -8.99548 -8.34873 -6.59422 0.03102 0.34921 1.23466 1.26326 1.36983 1.55562 1.76099 1.78020 2.11706 2.62883 3.02474 3.31115 3.76225 4.07177 4.10766 4.59742 4.78402 4.86040 5.06261 5.18665 5.30119 5.41348 5.57215 5.79486 5.97939 6.07500 6.32144 6.47608 6.95240 7.88689 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.044244 B = 0.007287 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.701141 B = 3841.677165 C = 4457.808707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.017 3.983 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.253 1.253 7 C -0.400 4.400 8 H 0.107 0.893 9 C 0.024 3.976 10 C -0.377 4.377 11 C -0.029 4.029 12 C -0.260 4.260 13 C -0.093 4.093 14 C 0.024 3.976 15 F -0.149 7.149 16 C -0.155 4.155 17 C 0.083 3.917 18 O -0.498 6.498 19 S 0.146 5.854 20 H 0.316 0.684 21 H 0.107 0.893 22 H 0.134 0.866 23 H 0.151 0.849 24 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -0.334 -2.020 2.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.203 4.203 3 Si 0.833 3.167 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.176 1.176 7 C -0.433 4.433 8 H 0.124 0.876 9 C -0.095 4.095 10 C -0.401 4.401 11 C -0.038 4.038 12 C -0.374 4.374 13 C -0.117 4.117 14 C 0.003 3.997 15 F -0.128 7.128 16 C -0.177 4.177 17 C 0.036 3.964 18 O -0.309 6.309 19 S 0.406 5.594 20 H 0.130 0.870 21 H 0.125 0.875 22 H 0.152 0.848 23 H 0.169 0.831 24 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.935 0.733 -1.289 1.753 hybrid contribution 1.332 -0.698 -0.618 1.626 sum 0.398 0.035 -1.907 1.949 Atomic orbital electron populations 1.68653 1.09132 1.33041 1.31025 1.27335 0.95893 1.06064 0.90975 0.84637 0.78796 0.73299 0.79969 1.18110 1.18252 1.17592 1.19734 0.96872 0.89385 1.37290 0.87562 1.21833 0.95573 0.96710 0.95430 1.19586 0.98106 0.90764 1.31682 1.18595 0.92716 0.93637 0.98822 1.23498 0.95732 1.02885 1.15330 1.20278 0.98757 0.90459 1.02167 1.16868 0.84642 0.85819 1.12394 1.91392 1.60668 1.66022 1.94729 1.20876 0.90423 1.00703 1.05655 1.18040 0.83927 0.88956 1.05444 1.84681 1.23359 1.88076 1.34794 1.84645 1.04953 0.92213 1.77592 0.87039 0.87486 0.84797 0.83132 0.74500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.16 10.62 21.86 0.23 -34.93 14 2 C 0.02 0.74 5.49 85.29 0.47 1.21 14 3 Si 1.02 31.85 29.57 68.60 2.03 33.88 14 4 H -0.26 -7.80 7.11 99.48 0.71 -7.10 14 5 H -0.26 -7.61 7.11 99.48 0.71 -6.90 14 6 H -0.25 -7.77 7.11 99.48 0.71 -7.06 14 7 C -0.40 -19.22 9.25 23.11 0.21 -19.01 14 8 H 0.11 4.83 7.86 -2.91 -0.02 4.81 14 9 C 0.02 1.24 6.11 22.38 0.14 1.38 14 10 C -0.38 -19.26 9.97 22.31 0.22 -19.04 14 11 C -0.03 -1.42 5.87 -21.38 -0.13 -1.55 14 12 C -0.26 -12.37 6.46 23.08 0.15 -12.22 14 13 C -0.09 -3.95 10.03 22.53 0.23 -3.72 14 14 C 0.02 0.96 7.30 22.41 0.16 1.13 14 15 F -0.15 -5.51 17.26 44.97 0.78 -4.74 14 16 C -0.16 -5.97 9.90 22.28 0.22 -5.75 14 17 C 0.08 3.51 6.78 23.16 0.16 3.66 14 18 O -0.50 -18.47 13.34 -90.54 -1.21 -19.67 14 19 S 0.15 7.08 20.16 -56.49 -1.14 5.94 14 20 H 0.32 12.23 8.30 -92.71 -0.77 11.46 14 21 H 0.11 5.34 8.06 -2.91 -0.02 5.32 14 22 H 0.13 5.06 8.06 -2.91 -0.02 5.03 14 23 H 0.15 4.84 8.06 -2.91 -0.02 4.82 14 24 H 0.40 10.63 9.06 -74.06 -0.67 9.96 14 Total: -1.00 -56.22 238.83 3.11 -53.11 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.59 Total: 20.34 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 1.83 Total: -53.92 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.23 Total: -34.93 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.21 Total: -19.67 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.78 Total: -4.74 kcal Atomic # 14 Polarization: 31.85 SS G_CDS: 2.03 Total: 33.88 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.14 Total: 5.94 kcal Total: -56.22 3.11 -53.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306876414.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.330 kcal (2) G-P(sol) polarization free energy of solvation -56.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds