Wall clock time and date at job start Mon Mar 30 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46710 * 2 1 4 4 O 1.21337 * 120.00225 * 359.97438 * 3 2 1 5 5 C 1.46574 * 119.99925 * 180.02562 * 3 2 1 6 6 C 1.39667 * 120.58434 * 354.56987 * 5 3 2 7 7 C 1.38065 * 120.06143 * 180.26129 * 6 5 3 8 8 C 1.38641 * 121.33061 * 359.77693 * 7 6 5 9 9 C 1.37699 * 121.21428 * 359.95571 * 8 7 6 10 10 Cl 1.73594 * 120.08868 * 179.97438 * 9 8 7 11 11 C 1.40987 * 119.82055 * 0.02562 * 9 8 7 12 12 C 1.40629 * 120.62649 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99867 * 134.50409 * 12 11 9 14 14 C 1.40410 * 120.00265 * 314.49585 * 12 11 9 15 15 N 1.30558 * 120.00125 * 338.07067 * 14 12 11 16 16 Si 1.86803 * 119.99829 * 157.78314 * 14 12 11 17 17 H 1.48501 * 109.46710 * 180.28173 * 16 14 12 18 18 H 1.48503 * 109.47295 * 300.28105 * 16 14 12 19 19 H 1.48502 * 109.46957 * 60.28288 * 16 14 12 20 20 H 1.09000 * 109.47109 * 299.99858 * 1 2 3 21 21 H 1.08991 * 109.47671 * 60.00425 * 1 2 3 22 22 H 1.09007 * 109.46650 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47336 * 239.99916 * 2 1 3 24 24 H 1.08998 * 109.47078 * 119.99295 * 2 1 3 25 25 H 1.08004 * 119.97139 * 0.02562 * 6 5 3 26 26 H 1.07994 * 119.33517 * 179.75663 * 7 6 5 27 27 H 1.08003 * 119.38800 * 179.97438 * 8 7 6 28 28 H 0.97000 * 119.99601 * 354.33059 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2437 2.3431 -0.0005 5 6 3.4733 1.6888 -0.0006 6 6 4.3908 0.6419 0.1127 7 6 5.7457 0.9071 0.1164 8 6 6.2271 2.2024 0.0046 9 6 5.3708 3.2741 -0.1153 10 17 6.0053 4.8840 -0.2527 11 6 3.9772 3.0603 -0.1251 12 6 3.0873 4.1424 -0.2462 13 1 2.2524 4.0812 -0.9285 14 6 3.2840 5.3024 0.5201 15 7 3.9874 5.2476 1.6187 16 14 2.5461 6.9258 -0.0365 17 1 2.9022 7.9904 0.9356 18 1 3.0812 7.2794 -1.3759 19 1 1.0685 6.7980 -0.1116 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 4.0400 -0.3758 0.2013 26 1 6.4447 0.0890 0.2085 27 1 7.2934 2.3740 0.0114 28 1 4.3046 4.3926 1.9493 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306878072.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:11 Heat of formation + Delta-G solvation = -56.882803 kcal Electronic energy + Delta-G solvation = -14683.130257 eV Core-core repulsion = 12109.504078 eV Total energy + Delta-G solvation = -2573.626179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41524 -38.69909 -36.76349 -35.79449 -33.66529 -31.67895 -31.20522 -27.40575 -25.69359 -23.45590 -22.66916 -20.16681 -19.83264 -17.50994 -16.62312 -16.45219 -16.15849 -15.74728 -15.36052 -15.11274 -14.64102 -14.23880 -13.73721 -13.35901 -13.06657 -12.98697 -12.73473 -12.49744 -12.14452 -12.06025 -11.96985 -11.95131 -11.60144 -11.49297 -10.58640 -10.13551 -9.54284 -9.35967 -9.01584 -6.51325 0.10107 0.81304 1.43622 1.55156 1.70517 1.78320 1.85821 2.28610 2.71926 3.33027 3.50660 4.19992 4.25158 4.32779 4.40629 4.59974 4.68312 4.87879 4.95570 5.05937 5.10772 5.32115 5.33696 5.52865 5.60061 5.76299 5.79569 6.05651 6.20472 6.62713 6.76374 7.16620 8.04054 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.012228 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.618468 B = 2289.208100 C = 3421.302571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C 0.377 3.623 4 O -0.506 6.506 5 C -0.302 4.302 6 C -0.025 4.025 7 C -0.238 4.238 8 C -0.060 4.060 9 C -0.148 4.148 10 Cl -0.096 7.096 11 C 0.094 3.906 12 C -0.493 4.493 13 H 0.068 0.932 14 C 0.018 3.982 15 N -0.785 5.785 16 Si 1.092 2.908 17 H -0.264 1.264 18 H -0.261 1.261 19 H -0.268 1.268 20 H 0.040 0.960 21 H 0.041 0.959 22 H 0.089 0.911 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.151 0.849 26 H 0.145 0.855 27 H 0.125 0.875 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -8.008 -2.078 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.193 4.193 3 C 0.261 3.739 4 O -0.387 6.387 5 C -0.305 4.305 6 C -0.043 4.043 7 C -0.257 4.257 8 C -0.079 4.079 9 C -0.175 4.175 10 Cl -0.068 7.068 11 C 0.090 3.910 12 C -0.520 4.520 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.407 5.407 16 Si 0.911 3.089 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.192 1.192 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.107 0.893 23 H 0.130 0.870 24 H 0.129 0.871 25 H 0.169 0.831 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.107 -5.795 -1.665 6.031 hybrid contribution 0.365 -1.246 -0.292 1.331 sum 0.472 -7.042 -1.957 7.324 Atomic orbital electron populations 1.21541 0.94070 1.02438 1.01316 1.21942 0.97805 0.93998 1.05596 1.22652 0.87921 0.91826 0.71519 1.90469 1.59126 1.49223 1.39920 1.21660 0.95131 0.93637 1.20074 1.21472 0.92676 0.98068 0.92120 1.20728 0.95727 0.95437 1.13831 1.21014 0.98701 0.92167 0.95985 1.21354 0.93491 0.84957 1.17706 1.98235 1.86318 1.25445 1.96792 1.18846 0.90595 0.93012 0.88584 1.20537 1.10674 0.99217 1.21600 0.91362 1.27938 0.93557 1.05895 0.92721 1.70420 1.22416 1.30812 1.17047 0.83316 0.76771 0.71318 0.77540 1.18845 1.18514 1.19245 0.94126 0.93954 0.89264 0.86981 0.87108 0.83139 0.83731 0.85700 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.20 71.98 0.66 -3.10 15 2 C -0.16 -4.52 5.12 29.85 0.15 -4.37 15 3 C 0.38 16.25 7.08 27.86 0.20 16.44 15 4 O -0.51 -26.22 13.71 -3.21 -0.04 -26.26 15 5 C -0.30 -13.75 6.06 -18.56 -0.11 -13.86 15 6 C -0.03 -0.91 9.47 22.57 0.21 -0.70 15 7 C -0.24 -8.40 9.98 22.32 0.22 -8.18 15 8 C -0.06 -2.42 9.75 22.24 0.22 -2.20 15 9 C -0.15 -7.14 5.52 22.82 0.13 -7.01 15 10 Cl -0.10 -4.56 25.15 -2.72 -0.07 -4.63 15 11 C 0.09 4.92 4.95 -19.83 -0.10 4.82 15 12 C -0.49 -27.49 6.98 23.38 0.16 -27.33 15 13 H 0.07 4.03 6.83 -2.91 -0.02 4.01 15 14 C 0.02 0.96 3.73 85.41 0.32 1.28 15 15 N -0.79 -43.01 11.80 21.90 0.26 -42.75 15 16 Si 1.09 47.14 29.99 68.60 2.06 49.20 15 17 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 20 H 0.04 1.24 8.10 -2.39 -0.02 1.22 15 21 H 0.04 1.27 8.10 -2.39 -0.02 1.25 15 22 H 0.09 1.77 8.14 -2.38 -0.02 1.75 15 23 H 0.11 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.11 2.66 7.94 -2.39 -0.02 2.64 15 25 H 0.15 3.97 7.02 -2.91 -0.02 3.95 15 26 H 0.14 3.92 8.06 -2.91 -0.02 3.89 15 27 H 0.13 4.43 8.06 -2.91 -0.02 4.40 15 28 H 0.28 15.83 7.24 -92.71 -0.67 15.16 15 Total: -1.00 -63.82 257.43 5.53 -58.28 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.27 Total: 10.35 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 2.06 Total: -44.20 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.26 Total: -42.75 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.06 Total: 49.20 kcal Atomic # 17 Polarization: -4.56 SS G_CDS: -0.07 Total: -4.63 kcal Total: -63.82 5.53 -58.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306878072.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.400 kcal (2) G-P(sol) polarization free energy of solvation -63.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds