Wall clock time and date at job start Mon Mar 30 2020 05:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86792 * 120.00336 * 2 1 4 4 H 1.48503 * 109.47381 * 239.99818 * 3 2 1 5 5 H 1.48501 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47443 * 119.99585 * 3 2 1 7 7 C 1.39782 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00010 * 162.48676 * 7 2 1 9 9 C 1.40809 * 119.99861 * 342.49240 * 7 2 1 10 10 C 1.40529 * 120.03788 * 334.34676 * 9 7 2 11 11 C 1.37609 * 119.95799 * 179.97438 * 10 9 7 12 12 C 1.38597 * 120.67100 * 359.97438 * 11 10 9 13 13 O 1.35566 * 119.62082 * 180.02562 * 12 11 10 14 14 C 1.41939 * 120.75764 * 0.29922 * 12 11 10 15 15 C 1.45465 * 129.13441 * 180.28222 * 14 12 11 16 16 F 1.35097 * 122.58038 * 359.39124 * 15 14 12 17 17 C 1.32045 * 114.83393 * 179.64183 * 15 14 12 18 18 S 1.75308 * 111.28304 * 359.76763 * 17 15 14 19 19 C 1.39224 * 118.95988 * 359.45144 * 14 12 11 20 20 H 0.96997 * 119.99667 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.01668 * 359.95608 * 10 9 7 22 22 H 1.08001 * 119.66555 * 179.97438 * 11 10 9 23 23 H 0.96695 * 114.00261 * 89.99515 * 13 12 11 24 24 H 1.07996 * 124.35963 * 179.74430 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 3.0977 1.6963 -1.2125 5 1 1.2789 2.7464 -0.0006 6 1 3.0976 1.6963 1.2125 7 6 2.0087 -1.2106 0.0005 8 1 3.0511 -1.2324 -0.2809 9 6 1.3535 -2.4016 0.3679 10 6 0.2357 -2.3560 1.2184 11 6 -0.4036 -3.5209 1.5760 12 6 0.0428 -4.7456 1.1051 13 8 -0.6035 -5.8799 1.4705 14 6 1.1722 -4.8263 0.2493 15 6 1.7880 -6.0001 -0.3500 16 9 1.3275 -7.2521 -0.1367 17 6 2.8349 -5.7480 -1.1142 18 16 3.1728 -4.0292 -1.1838 19 6 1.8220 -3.6523 -0.1220 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1210 -1.4073 1.5913 22 1 -1.2620 -3.4804 2.2302 23 1 -1.3219 -6.1326 0.8747 24 1 3.4093 -6.5034 -1.6297 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306880163.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:52 Heat of formation + Delta-G solvation = -74.579043 kcal Electronic energy + Delta-G solvation = -14173.153620 eV Core-core repulsion = 11477.343476 eV Total energy + Delta-G solvation = -2695.810144 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.75575 -40.21993 -37.66655 -36.35187 -34.49464 -31.32219 -29.84145 -26.93528 -24.33746 -23.06180 -21.72426 -19.76858 -19.21506 -17.62368 -17.46884 -16.84781 -16.67040 -16.46589 -15.96399 -15.48788 -15.06907 -14.35815 -14.02336 -13.51602 -13.36761 -13.13335 -12.84827 -12.77649 -12.29647 -12.09504 -11.67030 -11.60829 -11.20076 -10.95676 -9.95841 -9.36471 -8.82166 -8.47437 -6.40178 -0.07700 0.63465 0.78476 1.24059 1.27045 1.40542 1.51322 1.55865 2.16706 2.52441 3.30191 3.36944 3.74716 3.92720 4.31017 4.59635 4.62394 4.90207 5.11744 5.19535 5.32183 5.44830 5.74817 5.84823 5.99512 6.37938 6.66499 6.69278 7.11886 8.17586 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.009269 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.710933 B = 3020.106973 C = 3810.939595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.041 3.959 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.116 3.884 10 C -0.173 4.173 11 C -0.103 4.103 12 C -0.013 4.013 13 O -0.499 6.499 14 C -0.107 4.107 15 C 0.072 3.928 16 F -0.133 7.133 17 C -0.241 4.241 18 S 0.128 5.872 19 C -0.227 4.227 20 H 0.296 0.704 21 H 0.122 0.878 22 H 0.125 0.875 23 H 0.379 0.621 24 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 -2.091 -2.072 3.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.196 4.196 11 C -0.123 4.123 12 C -0.061 4.061 13 O -0.308 6.308 14 C -0.115 4.115 15 C 0.039 3.961 16 F -0.111 7.111 17 C -0.375 4.375 18 S 0.390 5.610 19 C -0.342 4.342 20 H 0.107 0.893 21 H 0.140 0.860 22 H 0.143 0.857 23 H 0.234 0.766 24 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.800 -1.179 -2.384 4.639 hybrid contribution -1.504 -0.554 0.423 1.658 sum 2.296 -1.732 -1.962 3.482 Atomic orbital electron populations 1.69887 1.08971 1.31554 1.32407 1.26764 0.95531 1.04545 0.90930 0.85209 0.78905 0.75212 0.80357 1.18133 1.18841 1.18275 1.19693 0.98410 0.91882 1.39992 0.89701 1.17317 0.92046 0.89999 0.89609 1.21059 0.99958 0.97060 1.01529 1.20998 0.99930 0.91355 1.00007 1.17884 0.96538 0.85947 1.05692 1.84723 1.51132 1.41330 1.53609 1.19378 0.99650 0.91356 1.01118 1.17420 0.97329 0.79028 1.02310 1.91416 1.88645 1.37160 1.93924 1.25230 1.02491 1.02879 1.06938 1.83332 1.30928 0.95848 1.50853 1.22651 1.05399 0.96404 1.09789 0.89259 0.85978 0.85725 0.76649 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.30 10.99 21.80 0.24 -38.06 14 2 C 0.04 1.86 5.12 85.19 0.44 2.30 14 3 Si 0.98 34.70 29.59 68.60 2.03 36.73 14 4 H -0.26 -8.83 7.11 99.48 0.71 -8.13 14 5 H -0.26 -8.78 7.11 99.48 0.71 -8.07 14 6 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 7 C -0.47 -23.41 8.80 23.27 0.20 -23.21 14 8 H 0.08 4.05 7.75 -2.91 -0.02 4.02 14 9 C 0.12 5.97 5.59 -21.09 -0.12 5.85 14 10 C -0.17 -8.67 8.65 22.68 0.20 -8.47 14 11 C -0.10 -4.78 9.90 22.21 0.22 -4.56 14 12 C -0.01 -0.58 6.78 23.27 0.16 -0.43 14 13 O -0.50 -20.51 12.94 -88.73 -1.15 -21.65 14 14 C -0.11 -5.07 6.04 -20.26 -0.12 -5.19 14 15 C 0.07 3.01 7.52 23.20 0.17 3.18 14 16 F -0.13 -5.28 16.83 44.97 0.76 -4.52 14 17 C -0.24 -8.53 11.03 66.88 0.74 -7.79 14 18 S 0.13 5.00 22.82 -56.49 -1.29 3.71 14 19 C -0.23 -10.97 6.36 23.51 0.15 -10.82 14 20 H 0.30 12.63 8.30 -92.71 -0.77 11.86 14 21 H 0.12 6.19 6.19 -2.91 -0.02 6.17 14 22 H 0.12 5.09 8.06 -2.91 -0.02 5.06 14 23 H 0.38 12.13 9.06 -74.06 -0.67 11.45 14 24 H 0.20 5.38 8.06 -2.91 -0.02 5.36 14 Total: -1.00 -56.73 237.70 3.22 -53.51 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.59 Total: 19.43 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 2.04 Total: -49.14 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.24 Total: -38.06 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.15 Total: -21.65 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.76 Total: -4.52 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.29 Total: 3.71 kcal Total: -56.73 3.22 -53.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306880163.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.072 kcal (2) G-P(sol) polarization free energy of solvation -56.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds