Wall clock time and date at job start Mon Mar 30 2020 05:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86793 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47418 * 270.00474 * 3 2 1 5 5 H 1.48498 * 109.47225 * 30.00757 * 3 2 1 6 6 H 1.48505 * 109.47105 * 150.00778 * 3 2 1 7 7 C 1.39851 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00103 * 197.90014 * 7 2 1 9 9 C 1.40939 * 120.00410 * 17.90198 * 7 2 1 10 10 C 1.40483 * 120.10323 * 24.96969 * 9 7 2 11 11 C 1.37854 * 119.87783 * 179.97438 * 10 9 7 12 12 C 1.37850 * 120.74879 * 0.02562 * 11 10 9 13 13 C 1.41281 * 120.91018 * 359.66564 * 12 11 10 14 14 C 1.45651 * 129.14812 * 179.69094 * 13 12 11 15 15 O 1.36260 * 122.62489 * 0.65932 * 14 13 12 16 16 C 1.32393 * 114.74570 * 180.39333 * 14 13 12 17 17 F 1.35108 * 124.34397 * 180.28863 * 16 14 13 18 18 S 1.75289 * 111.31936 * 0.26880 * 16 14 13 19 19 C 1.39486 * 119.00735 * 0.62187 * 13 12 11 20 20 H 0.97004 * 119.99793 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.06292 * 359.97438 * 10 9 7 22 22 H 1.08004 * 119.62092 * 179.97438 * 11 10 9 23 23 H 1.08002 * 119.54410 * 179.97438 * 12 11 10 24 24 H 0.96706 * 114.00319 * 269.73480 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4407 2.6526 0.7002 6 1 3.5408 1.4400 0.6999 7 6 2.0083 -1.2112 -0.0005 8 1 3.0491 -1.2340 0.2869 9 6 1.3548 -2.4021 -0.3762 10 6 0.2336 -2.3541 -1.2214 11 6 -0.4017 -3.5218 -1.5863 12 6 0.0499 -4.7419 -1.1308 13 6 1.1782 -4.8284 -0.2849 14 6 1.8002 -6.0081 0.3007 15 8 1.3389 -7.2703 0.0751 16 6 2.8521 -5.7584 1.0649 17 9 3.5770 -6.7070 1.6975 18 16 3.1840 -4.0394 1.1504 19 6 1.8280 -3.6551 0.0982 20 1 -0.4850 0.8401 0.0004 21 1 -0.1299 -1.4042 -1.5844 22 1 -1.2635 -3.4801 -2.2359 23 1 -0.4628 -5.6446 -1.4286 24 1 0.6775 -7.5676 0.7149 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306883727.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:46 Heat of formation + Delta-G solvation = -55.005805 kcal Electronic energy + Delta-G solvation = -14027.359861 eV Core-core repulsion = 11332.398476 eV Total energy + Delta-G solvation = -2694.961385 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.45810 -38.64365 -36.83622 -34.12549 -32.43002 -30.08428 -27.69297 -25.52537 -22.47401 -21.23713 -20.35941 -18.23618 -17.32643 -16.75788 -15.66460 -15.47125 -15.31417 -14.98209 -14.22965 -13.48041 -13.25557 -13.08254 -12.39819 -12.22922 -11.70975 -11.42519 -11.31368 -10.87694 -10.65878 -10.38451 -9.88903 -9.79606 -9.48904 -9.39166 -8.36532 -7.44783 -7.06504 -6.88866 -4.59393 1.48226 1.89407 2.49335 2.84689 2.90080 2.96504 2.99931 3.17355 3.76036 4.37343 4.68034 4.85507 5.31628 6.02222 6.04053 6.31634 6.36102 6.68946 6.85555 6.93369 7.11092 7.35158 7.62661 7.75611 7.89690 7.97694 8.30169 8.53848 8.59252 9.90948 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033564 B = 0.008721 C = 0.007066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.023737 B = 3209.809209 C = 3961.658355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.148 3.852 10 C -0.160 4.160 11 C -0.085 4.085 12 C -0.201 4.201 13 C -0.055 4.055 14 C 0.070 3.930 15 O -0.478 6.478 16 C -0.049 4.049 17 F -0.113 7.113 18 S 0.097 5.903 19 C -0.208 4.208 20 H 0.286 0.714 21 H 0.128 0.872 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -2.871 0.948 3.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.142 3.858 10 C -0.184 4.184 11 C -0.105 4.105 12 C -0.223 4.223 13 C -0.062 4.062 14 C 0.009 3.991 15 O -0.287 6.287 16 C -0.183 4.183 17 F -0.093 7.093 18 S 0.356 5.644 19 C -0.323 4.323 20 H 0.097 0.903 21 H 0.146 0.854 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.127 -1.947 1.290 3.159 hybrid contribution -0.961 -0.436 -0.115 1.062 sum 1.166 -2.382 1.175 2.901 Atomic orbital electron populations 1.69841 1.07660 1.29935 1.32816 1.25927 0.94810 1.01620 0.91875 0.86211 0.80577 0.79882 0.79675 1.18902 1.19993 1.18294 1.19522 0.98326 0.91149 1.39139 0.89886 1.16936 0.91282 0.88792 0.88773 1.21227 0.98983 0.97336 1.00812 1.20561 0.98415 0.92697 0.98802 1.20079 0.99260 0.96829 1.06124 1.18491 0.97744 0.89288 1.00637 1.18515 0.95774 0.85192 0.99605 1.84880 1.61441 1.26660 1.55689 1.21908 0.99581 0.92513 1.04277 1.91411 1.75970 1.61550 1.80323 1.83873 1.34118 0.92299 1.54141 1.22218 1.03108 0.97475 1.09526 0.90286 0.85445 0.88276 0.88412 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.55 10.97 55.54 0.61 -17.94 14 2 C 0.08 1.82 5.12 -17.34 -0.09 1.73 14 3 Si 0.91 17.45 29.59 -169.99 -5.03 12.41 14 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 14 7 C -0.45 -11.24 8.82 -37.96 -0.33 -11.58 14 8 H 0.08 2.01 7.74 -52.48 -0.41 1.60 14 9 C 0.15 3.74 5.59 -106.55 -0.60 3.15 14 10 C -0.16 -3.89 8.67 -38.88 -0.34 -4.23 14 11 C -0.09 -1.88 9.97 -39.86 -0.40 -2.28 14 12 C -0.20 -4.41 10.08 -38.57 -0.39 -4.79 14 13 C -0.06 -1.27 6.04 -105.32 -0.64 -1.91 14 14 C 0.07 1.46 6.92 -38.55 -0.27 1.20 14 15 O -0.48 -8.71 13.61 -20.57 -0.28 -8.99 14 16 C -0.05 -1.01 8.17 28.81 0.24 -0.78 14 17 F -0.11 -2.20 17.31 2.25 0.04 -2.16 14 18 S 0.10 2.04 22.81 -107.50 -2.45 -0.41 14 19 C -0.21 -5.00 6.36 -37.64 -0.24 -5.24 14 20 H 0.29 6.14 8.30 -40.82 -0.34 5.80 14 21 H 0.13 3.12 6.16 -52.49 -0.32 2.80 14 22 H 0.10 1.88 8.06 -52.48 -0.42 1.46 14 23 H 0.10 1.93 8.06 -52.49 -0.42 1.51 14 24 H 0.38 4.97 9.07 45.56 0.41 5.38 14 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -26.68 238.75 -6.86 -33.54 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -0.30 Total: 4.68 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -3.05 Total: -24.74 kcal Atomic # 7 Polarization: -18.55 SS G_CDS: 0.61 Total: -17.94 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.28 Total: -8.99 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.45 Total: -0.41 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.68 -6.86 -33.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306883727.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.462 kcal (2) G-P(sol) polarization free energy of solvation -26.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds