Wall clock time and date at job start Mon Mar 30 2020 05:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86793 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47418 * 270.00474 * 3 2 1 5 5 H 1.48498 * 109.47225 * 30.00757 * 3 2 1 6 6 H 1.48505 * 109.47105 * 150.00778 * 3 2 1 7 7 C 1.39851 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00103 * 197.90014 * 7 2 1 9 9 C 1.40939 * 120.00410 * 17.90198 * 7 2 1 10 10 C 1.40483 * 120.10323 * 24.96969 * 9 7 2 11 11 C 1.37854 * 119.87783 * 179.97438 * 10 9 7 12 12 C 1.37850 * 120.74879 * 0.02562 * 11 10 9 13 13 C 1.41281 * 120.91018 * 359.66564 * 12 11 10 14 14 C 1.45651 * 129.14812 * 179.69094 * 13 12 11 15 15 O 1.36260 * 122.62489 * 0.65932 * 14 13 12 16 16 C 1.32393 * 114.74570 * 180.39333 * 14 13 12 17 17 F 1.35108 * 124.34397 * 180.28863 * 16 14 13 18 18 S 1.75289 * 111.31936 * 0.26880 * 16 14 13 19 19 C 1.39486 * 119.00735 * 0.62187 * 13 12 11 20 20 H 0.97004 * 119.99793 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.06292 * 359.97438 * 10 9 7 22 22 H 1.08004 * 119.62092 * 179.97438 * 11 10 9 23 23 H 1.08002 * 119.54410 * 179.97438 * 12 11 10 24 24 H 0.96706 * 114.00319 * 269.73480 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4407 2.6526 0.7002 6 1 3.5408 1.4400 0.6999 7 6 2.0083 -1.2112 -0.0005 8 1 3.0491 -1.2340 0.2869 9 6 1.3548 -2.4021 -0.3762 10 6 0.2336 -2.3541 -1.2214 11 6 -0.4017 -3.5218 -1.5863 12 6 0.0499 -4.7419 -1.1308 13 6 1.1782 -4.8284 -0.2849 14 6 1.8002 -6.0081 0.3007 15 8 1.3389 -7.2703 0.0751 16 6 2.8521 -5.7584 1.0649 17 9 3.5770 -6.7070 1.6975 18 16 3.1840 -4.0394 1.1504 19 6 1.8280 -3.6551 0.0982 20 1 -0.4850 0.8401 0.0004 21 1 -0.1299 -1.4042 -1.5844 22 1 -1.2635 -3.4801 -2.2359 23 1 -0.4628 -5.6446 -1.4286 24 1 0.6775 -7.5676 0.7149 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306883727.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:46 Heat of formation + Delta-G solvation = -70.714699 kcal Electronic energy + Delta-G solvation = -14028.041049 eV Core-core repulsion = 11332.398476 eV Total energy + Delta-G solvation = -2695.642573 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.04704 -40.30066 -38.45268 -35.84389 -34.10245 -31.86261 -29.40020 -27.31494 -24.16777 -22.98329 -22.02471 -19.93527 -18.87357 -18.48557 -17.26903 -17.17479 -17.00618 -16.58540 -15.79576 -15.18694 -14.92939 -14.70792 -14.06595 -13.95776 -13.36667 -13.03504 -12.95035 -12.54629 -12.28453 -12.01024 -11.55748 -11.47334 -11.18543 -11.11374 -10.09905 -9.20016 -8.80085 -8.60127 -6.42412 -0.19021 0.24381 0.74637 1.15150 1.23600 1.39928 1.52160 1.56504 2.17560 2.63024 3.09400 3.28957 3.50772 4.33837 4.37717 4.61932 4.74906 4.93511 5.15337 5.16385 5.36608 5.60485 5.83106 6.00524 6.11758 6.49796 6.62964 6.73738 6.79202 8.20536 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033564 B = 0.008721 C = 0.007066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.023737 B = 3209.809209 C = 3961.658355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.043 3.957 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.182 4.182 11 C -0.085 4.085 12 C -0.200 4.200 13 C -0.070 4.070 14 C 0.074 3.926 15 O -0.478 6.478 16 C -0.049 4.049 17 F -0.105 7.105 18 S 0.110 5.890 19 C -0.236 4.236 20 H 0.295 0.705 21 H 0.118 0.882 22 H 0.129 0.871 23 H 0.124 0.876 24 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -3.257 0.936 3.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.511 4.511 8 H 0.096 0.904 9 C 0.115 3.885 10 C -0.206 4.206 11 C -0.104 4.104 12 C -0.222 4.222 13 C -0.077 4.077 14 C 0.014 3.986 15 O -0.290 6.290 16 C -0.183 4.183 17 F -0.084 7.084 18 S 0.369 5.631 19 C -0.351 4.351 20 H 0.106 0.894 21 H 0.135 0.865 22 H 0.147 0.853 23 H 0.141 0.859 24 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.056 -2.362 1.289 3.386 hybrid contribution -0.997 -0.458 -0.107 1.102 sum 1.059 -2.820 1.183 3.236 Atomic orbital electron populations 1.69863 1.08841 1.31289 1.32984 1.26691 0.95516 1.04334 0.90969 0.85208 0.79116 0.75780 0.79822 1.18340 1.18872 1.18391 1.19705 0.98387 0.92244 1.40810 0.90369 1.17270 0.92103 0.89637 0.89457 1.21266 0.99702 0.97863 1.01732 1.20871 0.98886 0.92035 0.98634 1.20430 0.98846 0.97729 1.05233 1.18861 0.98125 0.89810 1.00893 1.18339 0.95652 0.85628 0.99020 1.84821 1.62323 1.25013 1.56810 1.21859 0.99665 0.92360 1.04425 1.91432 1.75747 1.61078 1.80123 1.83710 1.33053 0.92829 1.53525 1.22492 1.04482 0.97697 1.10473 0.89395 0.86454 0.85311 0.85855 0.73515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.69 10.97 21.81 0.24 -38.45 14 2 C 0.04 2.00 5.12 85.22 0.44 2.44 14 3 Si 0.98 35.56 29.59 68.60 2.03 37.59 14 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 14 5 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 6 H -0.26 -9.37 7.11 99.48 0.71 -8.67 14 7 C -0.48 -24.46 8.82 23.32 0.21 -24.25 14 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 14 9 C 0.12 6.22 5.59 -21.11 -0.12 6.11 14 10 C -0.18 -8.95 8.67 22.73 0.20 -8.75 14 11 C -0.09 -3.66 9.97 22.09 0.22 -3.44 14 12 C -0.20 -8.46 10.08 22.93 0.23 -8.23 14 13 C -0.07 -3.16 6.04 -20.32 -0.12 -3.28 14 14 C 0.07 2.98 6.92 23.08 0.16 3.14 14 15 O -0.48 -16.00 13.61 -96.52 -1.31 -17.31 14 16 C -0.05 -1.96 8.17 66.72 0.55 -1.41 14 17 F -0.10 -3.85 17.31 44.97 0.78 -3.08 14 18 S 0.11 4.60 22.81 -56.49 -1.29 3.31 14 19 C -0.24 -11.39 6.36 23.53 0.15 -11.24 14 20 H 0.30 12.65 8.30 -92.71 -0.77 11.88 14 21 H 0.12 5.88 6.16 -2.91 -0.02 5.86 14 22 H 0.13 4.64 8.06 -2.91 -0.02 4.61 14 23 H 0.12 4.49 8.06 -2.91 -0.02 4.47 14 24 H 0.41 9.23 9.07 -74.05 -0.67 8.56 14 Total: -1.00 -55.98 238.75 2.94 -53.04 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.59 Total: 13.83 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 1.90 Total: -48.93 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.24 Total: -38.45 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.31 Total: -17.31 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.29 Total: 3.31 kcal Total: -55.98 2.94 -53.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306883727.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.680 kcal (2) G-P(sol) polarization free energy of solvation -55.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds