Wall clock time and date at job start Mon Mar 30 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30932 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48500 * 109.47413 * 270.00610 * 3 2 1 5 5 H 1.48502 * 109.47054 * 30.00590 * 3 2 1 6 6 H 1.48495 * 109.47069 * 150.00232 * 3 2 1 7 7 C 1.39840 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99951 * 162.54610 * 7 2 1 9 9 C 1.40904 * 119.99726 * 342.54412 * 7 2 1 10 10 C 1.40513 * 120.06879 * 334.39970 * 9 7 2 11 11 C 1.37750 * 119.90435 * 180.02562 * 10 9 7 12 12 C 1.38171 * 120.69468 * 0.28283 * 11 10 9 13 13 F 1.35103 * 119.58130 * 179.71665 * 12 11 10 14 14 C 1.41616 * 120.84093 * 359.44432 * 12 11 10 15 15 C 1.45450 * 129.08356 * 180.23074 * 14 12 11 16 16 C 1.32537 * 114.74874 * 180.29838 * 15 14 12 17 17 O 1.35759 * 124.37907 * 180.02562 * 16 15 14 18 18 S 1.75303 * 111.24097 * 359.97438 * 16 15 14 19 19 C 1.39293 * 118.99338 * 0.54354 * 14 12 11 20 20 H 0.97005 * 120.00216 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.04960 * 0.02562 * 10 9 7 22 22 H 1.08007 * 119.65142 * 179.97438 * 11 10 9 23 23 H 1.08003 * 122.62767 * 0.31711 * 15 14 12 24 24 H 0.96706 * 113.99523 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 2.4907 2.0466 -1.4000 5 1 1.4408 2.6527 0.7002 6 1 3.5408 1.4402 0.7000 7 6 2.0086 -1.2110 -0.0005 8 1 3.0512 -1.2324 -0.2811 9 6 1.3527 -2.4033 0.3650 10 6 0.2336 -2.3596 1.2136 11 6 -0.4046 -3.5274 1.5692 12 6 0.0470 -4.7477 1.1046 13 9 -0.5926 -5.8796 1.4722 14 6 1.1684 -4.8268 0.2433 15 6 1.7878 -6.0014 -0.3502 16 6 2.8394 -5.7471 -1.1158 17 8 3.5629 -6.6954 -1.7641 18 16 3.1743 -4.0277 -1.1841 19 6 1.8222 -3.6528 -0.1234 20 1 -0.4851 0.8401 0.0004 21 1 -0.1255 -1.4119 1.5865 22 1 -1.2642 -3.4891 2.2221 23 1 1.4195 -7.0024 -0.1806 24 1 4.2995 -6.3425 -2.2819 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306902549.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:01 Heat of formation + Delta-G solvation = -75.332984 kcal Electronic energy + Delta-G solvation = -14012.352782 eV Core-core repulsion = 11316.509945 eV Total energy + Delta-G solvation = -2695.842837 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.31748 -39.91534 -38.96218 -36.17405 -34.45230 -31.65098 -29.24106 -27.14261 -24.32082 -23.08344 -21.75361 -20.37073 -18.94053 -18.23319 -17.31943 -16.81894 -16.22310 -16.19749 -15.73468 -15.42504 -15.39444 -14.63041 -14.05929 -13.83748 -13.58751 -13.33548 -12.82308 -12.72409 -12.42586 -11.99951 -11.88662 -11.40960 -11.32605 -11.00063 -10.02753 -9.05023 -8.79750 -8.56057 -6.42663 0.08482 0.44589 0.61593 1.10393 1.34736 1.41412 1.54256 1.62591 2.16780 2.55633 2.77737 3.40329 3.92086 4.22370 4.34789 4.51257 4.80291 4.87373 5.10644 5.17465 5.32737 5.48539 5.78351 5.80479 6.08125 6.36656 6.42509 6.68623 6.73046 8.17128 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.009742 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.740913 B = 2873.330687 C = 3884.202201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.470 4.470 8 H 0.085 0.915 9 C 0.122 3.878 10 C -0.175 4.175 11 C -0.104 4.104 12 C -0.049 4.049 13 F -0.166 7.166 14 C -0.051 4.051 15 C -0.212 4.212 16 C 0.062 3.938 17 O -0.440 6.440 18 S 0.076 5.924 19 C -0.238 4.238 20 H 0.297 0.703 21 H 0.127 0.873 22 H 0.130 0.870 23 H 0.142 0.858 24 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -1.349 -2.146 5.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.116 3.884 10 C -0.197 4.197 11 C -0.124 4.124 12 C -0.071 4.071 13 F -0.145 7.145 14 C -0.059 4.059 15 C -0.243 4.243 16 C -0.099 4.099 17 O -0.247 6.247 18 S 0.332 5.668 19 C -0.353 4.353 20 H 0.108 0.892 21 H 0.145 0.855 22 H 0.148 0.852 23 H 0.160 0.840 24 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 5.874 -0.881 -2.658 6.508 hybrid contribution -0.821 -0.197 0.534 0.999 sum 5.053 -1.078 -2.124 5.586 Atomic orbital electron populations 1.69873 1.09053 1.31614 1.32110 1.26803 0.95522 1.04629 0.90848 0.85152 0.79247 0.75417 0.79794 1.18488 1.18647 1.17993 1.19751 0.98362 0.91826 1.39830 0.89680 1.17332 0.91801 0.90125 0.89144 1.20973 0.99843 0.96785 1.02129 1.20717 1.00227 0.90930 1.00524 1.17177 0.98477 0.81965 1.09502 1.91269 1.81522 1.50444 1.91271 1.18687 0.96207 0.92068 0.98921 1.20213 0.99675 0.98892 1.05515 1.22344 0.96575 0.92141 0.98889 1.84777 1.45718 1.30752 1.63447 1.83405 1.32939 0.96761 1.53653 1.22343 1.05064 0.96859 1.10993 0.89169 0.85533 0.85237 0.84040 0.72385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.20 10.99 21.81 0.24 -37.96 14 2 C 0.04 1.85 5.13 85.21 0.44 2.29 14 3 Si 0.98 34.38 29.59 68.60 2.03 36.41 14 4 H -0.26 -8.80 7.11 99.48 0.71 -8.10 14 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 14 6 H -0.26 -8.84 7.11 99.48 0.71 -8.14 14 7 C -0.47 -23.23 8.81 23.31 0.21 -23.02 14 8 H 0.09 4.03 7.75 -2.91 -0.02 4.01 14 9 C 0.12 6.28 5.59 -21.11 -0.12 6.17 14 10 C -0.17 -8.79 8.66 22.71 0.20 -8.59 14 11 C -0.10 -4.92 9.94 22.14 0.22 -4.70 14 12 C -0.05 -2.38 7.38 23.09 0.17 -2.21 14 13 F -0.17 -7.67 17.21 44.97 0.77 -6.90 14 14 C -0.05 -2.46 6.04 -20.33 -0.12 -2.58 14 15 C -0.21 -8.93 10.36 22.98 0.24 -8.70 14 16 C 0.06 2.24 7.51 66.67 0.50 2.74 14 17 O -0.44 -12.18 13.64 -90.85 -1.24 -13.42 14 18 S 0.08 2.91 22.75 -56.49 -1.29 1.62 14 19 C -0.24 -11.55 6.35 23.49 0.15 -11.40 14 20 H 0.30 12.59 8.30 -92.70 -0.77 11.82 14 21 H 0.13 6.39 6.19 -2.91 -0.02 6.37 14 22 H 0.13 5.36 8.06 -2.91 -0.02 5.33 14 23 H 0.14 5.60 8.06 -2.91 -0.02 5.58 14 24 H 0.42 6.82 9.01 -74.05 -0.67 6.15 14 Total: -1.00 -58.18 238.62 2.99 -55.18 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.60 Total: 15.06 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 1.88 Total: -50.00 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.24 Total: -37.96 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.24 Total: -13.42 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.77 Total: -6.90 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.29 Total: 1.62 kcal Total: -58.18 2.99 -55.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306902549.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.150 kcal (2) G-P(sol) polarization free energy of solvation -58.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds