Wall clock time and date at job start Mon Mar 30 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00138 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99797 * 3 2 1 6 6 H 1.48502 * 109.47154 * 149.99887 * 3 2 1 7 7 C 1.40100 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00593 * 179.72454 * 7 2 1 9 9 C 1.39825 * 119.99965 * 0.02562 * 7 2 1 10 10 S 1.75451 * 124.84568 * 359.74834 * 9 7 2 11 11 C 1.75976 * 91.83225 * 179.97438 * 10 9 7 12 12 C 1.40100 * 110.06144 * 359.97438 * 11 10 9 13 13 C 1.41954 * 118.63935 * 180.02562 * 12 11 10 14 14 C 1.35952 * 120.58490 * 0.02562 * 13 12 11 15 15 C 1.38876 * 120.67402 * 359.97438 * 14 13 12 16 16 C 1.38144 * 120.15340 * 0.02562 * 15 14 13 17 17 O 1.35965 * 119.90332 * 179.97438 * 16 15 14 18 18 C 1.37259 * 124.84682 * 179.44339 * 9 7 2 19 19 F 1.35092 * 122.55502 * 0.02562 * 18 9 7 20 20 H 0.96995 * 120.00129 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.70744 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.65878 * 180.02562 * 14 13 12 23 23 H 1.07998 * 119.92276 * 179.97438 * 15 14 13 24 24 H 0.96709 * 114.00072 * 270.02214 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0089 -1.2133 0.0005 8 1 3.0889 -1.2133 -0.0040 9 6 1.3098 -2.4242 0.0005 10 16 -0.4384 -2.5725 0.0062 11 6 -0.3458 -4.3298 0.0017 12 6 0.9936 -4.7405 -0.0046 13 6 1.2789 -6.1311 -0.0096 14 6 0.2714 -7.0439 -0.0089 15 6 -1.0556 -6.6345 -0.0027 16 6 -1.3665 -5.2885 0.0023 17 8 -2.6674 -4.8933 0.0077 18 6 1.8933 -3.6666 -0.0099 19 9 3.2329 -3.8406 -0.0209 20 1 -0.4850 0.8400 -0.0004 21 1 2.3054 -6.4668 -0.0148 22 1 0.5055 -8.0982 -0.0123 23 1 -1.8464 -7.3700 -0.0026 24 1 -3.0468 -4.7767 -0.8741 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306913207.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:34 Heat of formation + Delta-G solvation = -93.687224 kcal Electronic energy + Delta-G solvation = -14078.013318 eV Core-core repulsion = 11381.374581 eV Total energy + Delta-G solvation = -2696.638737 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.92681 -40.32327 -37.87274 -36.58664 -34.60235 -31.04131 -30.36769 -27.32655 -24.22770 -23.17507 -21.35998 -20.12035 -18.81959 -17.81934 -17.64826 -16.70666 -16.18392 -16.05888 -15.97538 -15.33838 -15.16703 -14.37493 -14.00245 -13.65804 -13.50600 -13.17801 -12.82679 -12.51605 -12.35560 -11.99090 -11.97788 -11.39939 -11.15203 -11.09080 -10.03549 -9.43343 -9.05515 -8.24796 -6.68077 0.10588 0.52734 1.17593 1.21051 1.31890 1.51218 1.68309 1.71953 2.08805 2.68618 2.99979 3.42034 4.10416 4.22207 4.43619 4.56878 4.76846 4.94927 4.99061 5.17215 5.30505 5.54956 5.65045 5.79863 5.85923 6.09258 6.32362 6.37079 6.92040 7.81823 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.036562 B = 0.009039 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.630445 B = 3097.032072 C = 3850.259844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.019 3.981 3 Si 1.017 2.983 4 H -0.252 1.252 5 H -0.251 1.251 6 H -0.258 1.258 7 C -0.394 4.394 8 H 0.097 0.903 9 C -0.014 4.014 10 S 0.191 5.809 11 C -0.309 4.309 12 C -0.019 4.019 13 C -0.170 4.170 14 C -0.079 4.079 15 C -0.200 4.200 16 C 0.157 3.843 17 O -0.505 6.505 18 C -0.220 4.220 19 F -0.169 7.169 20 H 0.320 0.680 21 H 0.113 0.887 22 H 0.156 0.844 23 H 0.152 0.848 24 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -1.415 -1.727 3.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.201 4.201 3 Si 0.834 3.166 4 H -0.176 1.176 5 H -0.174 1.174 6 H -0.181 1.181 7 C -0.427 4.427 8 H 0.115 0.885 9 C -0.135 4.135 10 S 0.450 5.550 11 C -0.424 4.424 12 C -0.028 4.028 13 C -0.190 4.190 14 C -0.099 4.099 15 C -0.221 4.221 16 C 0.108 3.892 17 O -0.317 6.317 18 C -0.245 4.245 19 F -0.149 7.149 20 H 0.134 0.866 21 H 0.131 0.869 22 H 0.173 0.827 23 H 0.170 0.830 24 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.383 -0.282 -1.116 4.532 hybrid contribution 1.889 -0.442 -0.472 1.997 sum -2.494 -0.723 -1.588 3.044 Atomic orbital electron populations 1.68606 1.08991 1.33378 1.30105 1.27332 0.96002 1.05857 0.90940 0.84641 0.78596 0.72993 0.80415 1.17614 1.17400 1.18123 1.19613 0.96243 0.89525 1.37359 0.88475 1.21872 0.98193 0.95611 0.97778 1.84494 1.00156 0.91650 1.78664 1.23925 0.96147 1.03375 1.18921 1.17926 0.91737 0.94136 0.98958 1.20773 0.99861 0.90603 1.07755 1.20627 0.91444 0.99873 0.97919 1.21194 0.97596 0.93692 1.09581 1.17792 0.81775 0.90649 0.98943 1.84717 1.22109 1.90034 1.34851 1.16492 0.76935 0.92446 1.38594 1.91125 1.30615 1.96084 1.97030 0.86617 0.86877 0.82685 0.83048 0.73911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.61 10.58 21.86 0.23 -35.38 14 2 C 0.02 0.86 5.50 85.29 0.47 1.33 14 3 Si 1.02 33.36 29.56 68.60 2.03 35.38 14 4 H -0.25 -7.90 7.11 99.48 0.71 -7.19 14 5 H -0.25 -7.46 7.11 99.48 0.71 -6.75 14 6 H -0.26 -8.53 7.11 99.48 0.71 -7.82 14 7 C -0.39 -20.53 9.14 23.11 0.21 -20.32 14 8 H 0.10 4.99 7.80 -2.91 -0.02 4.97 14 9 C -0.01 -0.79 6.12 22.42 0.14 -0.65 14 10 S 0.19 9.55 20.08 -56.49 -1.13 8.42 14 11 C -0.31 -15.04 6.42 23.16 0.15 -14.90 14 12 C -0.02 -1.00 5.86 -21.46 -0.13 -1.12 14 13 C -0.17 -7.38 10.01 22.66 0.23 -7.16 14 14 C -0.08 -2.76 9.94 21.89 0.22 -2.55 14 15 C -0.20 -7.03 9.97 22.40 0.22 -6.80 14 16 C 0.16 6.44 6.72 22.68 0.15 6.59 14 17 O -0.50 -17.85 13.47 -93.15 -1.25 -19.11 14 18 C -0.22 -12.37 7.46 22.49 0.17 -12.20 14 19 F -0.17 -9.47 17.08 44.97 0.77 -8.70 14 20 H 0.32 12.49 8.30 -92.71 -0.77 11.72 14 21 H 0.11 4.63 8.06 -2.91 -0.02 4.61 14 22 H 0.16 4.04 8.06 -2.91 -0.02 4.01 14 23 H 0.15 4.16 8.06 -2.91 -0.02 4.14 14 24 H 0.40 10.13 9.07 -74.05 -0.67 9.46 14 Total: -1.00 -63.07 238.57 3.05 -60.02 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.59 Total: 17.15 kcal Atomic # 6 Polarization: -59.60 SS G_CDS: 1.83 Total: -57.78 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.23 Total: -35.38 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.25 Total: -19.11 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.77 Total: -8.70 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.38 kcal Atomic # 16 Polarization: 9.55 SS G_CDS: -1.13 Total: 8.42 kcal Total: -63.07 3.05 -60.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306913207.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.668 kcal (2) G-P(sol) polarization free energy of solvation -63.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds