Wall clock time and date at job start Mon Mar 30 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20771 * 119.99724 * 2 1 4 4 C 1.50697 * 120.00259 * 180.02562 * 2 1 3 5 5 C 1.50706 * 109.47190 * 180.02562 * 4 2 1 6 6 C 1.38638 * 119.74926 * 265.25498 * 5 4 2 7 7 C 1.37606 * 120.25721 * 180.29904 * 6 5 4 8 8 C 1.40744 * 119.76944 * 359.72232 * 7 6 5 9 9 C 1.41397 * 120.23414 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00269 * 150.20771 * 9 8 7 11 11 C 1.39944 * 120.00151 * 330.20047 * 9 8 7 12 12 N 1.30829 * 120.00447 * 161.74049 * 11 9 8 13 13 Si 1.86800 * 119.99955 * 341.73918 * 11 9 8 14 14 H 1.48503 * 109.47260 * 95.41137 * 13 11 9 15 15 H 1.48499 * 109.47274 * 215.41340 * 13 11 9 16 16 H 1.48503 * 109.47017 * 335.41038 * 13 11 9 17 17 C 1.40676 * 119.52867 * 359.97438 * 8 7 6 18 18 C 1.37757 * 119.72807 * 0.02562 * 17 8 7 19 19 Cl 1.73603 * 119.88434 * 179.97438 * 18 17 8 20 20 H 1.08997 * 109.46980 * 269.99740 * 1 2 3 21 21 H 1.08996 * 109.47037 * 30.00148 * 1 2 3 22 22 H 1.09004 * 109.46762 * 150.00221 * 1 2 3 23 23 H 1.08996 * 109.47144 * 59.99569 * 4 2 1 24 24 H 1.09001 * 109.46688 * 299.99426 * 4 2 1 25 25 H 1.07997 * 119.87331 * 359.97438 * 6 5 4 26 26 H 1.08002 * 120.11652 * 179.69763 * 7 6 5 27 27 H 0.96995 * 120.00087 * 180.02562 * 12 11 9 28 28 H 1.07994 * 120.13291 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7422 -1.0296 0.0002 6 6 4.4372 -1.0010 -1.1991 7 6 5.7914 -0.7566 -1.2100 8 6 6.4703 -0.5293 0.0017 9 6 7.8615 -0.2766 0.0018 10 1 8.2978 0.3427 0.7715 11 6 8.6731 -0.8291 -0.9954 12 7 9.8625 -0.3328 -1.2205 13 14 8.0583 -2.2755 -2.0051 14 1 7.4644 -1.7780 -3.2720 15 1 9.1933 -3.1823 -2.3130 16 1 7.0285 -3.0161 -1.2329 17 6 5.7547 -0.5541 1.2126 18 6 4.3994 -0.8008 1.2002 19 17 3.5125 -0.8331 2.6923 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8901 -0.5138 23 1 1.9972 -1.8762 -0.8907 24 1 1.9973 -1.8769 0.8892 25 1 3.9148 -1.1763 -2.1279 26 1 6.3314 -0.7396 -2.1452 27 1 10.4248 -0.7156 -1.9119 28 1 6.2658 -0.3806 2.1480 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306921934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:12 Heat of formation + Delta-G solvation = -40.596973 kcal Electronic energy + Delta-G solvation = -14318.879064 eV Core-core repulsion = 11745.959092 eV Total energy + Delta-G solvation = -2572.919972 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22961 -37.73535 -35.68053 -33.87065 -32.07952 -30.25298 -29.61712 -27.77247 -24.08029 -21.71734 -20.65305 -19.16885 -17.61774 -15.91836 -15.39016 -15.25278 -14.89712 -14.35130 -14.12176 -13.69613 -12.97112 -12.75571 -12.51682 -12.15269 -12.10357 -11.74678 -11.47637 -11.29792 -11.00897 -10.69403 -10.48833 -10.14838 -9.88106 -9.70576 -9.37221 -9.13984 -7.78223 -7.56306 -7.05188 -4.59561 2.36271 2.38613 2.45917 3.01697 3.04049 3.15513 3.24622 3.90089 4.22216 4.59792 5.18569 5.27649 5.36978 5.44499 5.62128 5.71833 5.95452 6.01342 6.17961 6.38265 6.62266 6.66415 6.91587 7.17945 7.31623 7.50050 7.71299 7.85829 7.95789 8.23121 8.48436 8.66736 9.96569 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034417 B = 0.007832 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.348472 B = 3574.135129 C = 3965.645111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.346 3.654 3 O -0.442 6.442 4 C -0.111 4.111 5 C -0.203 4.203 6 C -0.054 4.054 7 C -0.234 4.234 8 C 0.102 3.898 9 C -0.440 4.440 10 H 0.094 0.906 11 C 0.084 3.916 12 N -0.801 5.801 13 Si 0.912 3.088 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.243 1.243 17 C -0.201 4.201 18 C 0.031 3.969 19 Cl -0.118 7.118 20 H 0.089 0.911 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.287 0.713 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 -4.297 0.310 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.220 3.780 3 O -0.314 6.314 4 C -0.148 4.148 5 C -0.205 4.205 6 C -0.073 4.073 7 C -0.253 4.253 8 C 0.099 3.901 9 C -0.468 4.468 10 H 0.112 0.888 11 C -0.136 4.136 12 N -0.424 5.424 13 Si 0.738 3.262 14 H -0.195 1.195 15 H -0.216 1.216 16 H -0.166 1.166 17 C -0.222 4.222 18 C 0.005 3.995 19 Cl -0.090 7.090 20 H 0.108 0.892 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.006 -3.693 0.345 12.566 hybrid contribution -0.205 -0.618 -0.380 0.753 sum -12.211 -4.310 -0.035 12.949 Atomic orbital electron populations 1.22310 0.95596 1.04062 1.04111 1.24739 0.91061 0.91110 0.71083 1.90424 1.71838 1.34894 1.34218 1.20854 0.93543 0.96664 1.03725 1.18445 0.93262 1.16927 0.91860 1.20343 0.94102 0.97729 0.95104 1.21063 0.94025 1.12799 0.97438 1.17596 0.93630 0.88752 0.90139 1.19509 0.90664 1.26563 1.10061 0.88830 1.26193 0.94405 0.97710 0.95291 1.69687 1.09444 1.36111 1.27169 0.86294 0.78789 0.80919 0.80170 1.19474 1.21639 1.16577 1.20893 0.91473 1.11658 0.98128 1.20446 0.91877 1.03176 0.84046 1.98258 1.77084 1.97211 1.36401 0.89223 0.90288 0.90130 0.89001 0.88714 0.88104 0.87688 0.90215 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 10.25 36.01 0.37 -1.76 15 2 C 0.35 5.38 7.26 -29.04 -0.21 5.17 15 3 O -0.44 -8.96 16.78 5.99 0.10 -8.86 15 4 C -0.11 -1.71 5.25 -29.03 -0.15 -1.87 15 5 C -0.20 -4.14 4.40 -104.29 -0.46 -4.60 15 6 C -0.05 -1.16 9.65 -39.66 -0.38 -1.54 15 7 C -0.23 -5.58 7.18 -38.87 -0.28 -5.86 15 8 C 0.10 2.59 5.10 -106.83 -0.55 2.04 15 9 C -0.44 -11.78 9.57 -37.74 -0.36 -12.14 15 10 H 0.09 2.62 8.06 -52.49 -0.42 2.20 15 11 C 0.08 2.16 5.40 -17.34 -0.09 2.07 15 12 N -0.80 -20.96 13.93 55.55 0.77 -20.18 15 13 Si 0.91 20.21 24.52 -169.99 -4.17 16.04 15 14 H -0.27 -5.75 6.71 56.52 0.38 -5.37 15 15 H -0.29 -6.16 7.11 56.52 0.40 -5.76 15 16 H -0.24 -5.48 6.86 56.52 0.39 -5.09 15 17 C -0.20 -4.79 9.57 -38.84 -0.37 -5.16 15 18 C 0.03 0.67 6.30 -39.58 -0.25 0.42 15 19 Cl -0.12 -2.18 27.36 -51.86 -1.42 -3.60 15 20 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.08 0.64 8.12 -51.93 -0.42 0.21 15 23 H 0.09 1.17 8.05 -51.93 -0.42 0.76 15 24 H 0.09 1.34 7.10 -51.93 -0.37 0.97 15 25 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 26 H 0.11 2.47 4.73 -52.49 -0.25 2.22 15 27 H 0.29 6.77 8.30 -40.82 -0.34 6.43 15 28 H 0.11 2.55 8.06 -52.49 -0.42 2.13 15 LS Contribution 259.95 15.07 3.92 3.92 Total: -1.00 -28.74 259.95 -6.27 -35.01 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -2.74 Total: 0.90 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -2.74 Total: -23.23 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.77 Total: -20.18 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.10 Total: -8.86 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.17 Total: 16.04 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.42 Total: -3.60 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.74 -6.27 -35.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306921934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.588 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds