Wall clock time and date at job start Mon Mar 30 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30998 * 1 3 3 Si 1.86805 * 119.99657 * 2 1 4 4 H 1.48501 * 109.46876 * 239.99952 * 3 2 1 5 5 H 1.48496 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47089 * 119.99830 * 3 2 1 7 7 C 1.39751 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00258 * 163.20429 * 7 2 1 9 9 C 1.40882 * 119.99776 * 343.20162 * 7 2 1 10 10 C 1.41252 * 120.22174 * 334.33037 * 9 7 2 11 11 C 1.35153 * 120.38377 * 179.72284 * 10 9 7 12 12 C 1.42194 * 120.91767 * 0.27373 * 11 10 9 13 13 C 1.40224 * 128.49281 * 179.97438 * 12 11 10 14 14 C 1.33476 * 115.72934 * 180.02562 * 13 12 11 15 15 O 1.35526 * 124.64499 * 179.97438 * 14 13 12 16 16 S 1.75470 * 110.70704 * 359.97438 * 14 13 12 17 17 C 1.40281 * 119.03308 * 359.97438 * 12 11 10 18 18 C 1.38936 * 120.14651 * 359.97438 * 17 12 11 19 19 F 1.35101 * 120.02524 * 179.97438 * 18 17 12 20 20 H 0.97000 * 120.00010 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.81205 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.53699 * 180.25737 * 11 10 9 23 23 H 1.08002 * 122.13414 * 0.04262 * 13 12 11 24 24 H 0.96701 * 114.00532 * 89.99336 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.0976 1.6965 -1.2125 5 1 1.2788 2.7464 -0.0006 6 1 3.0976 1.6966 1.2125 7 6 2.0088 -1.2103 0.0005 8 1 3.0542 -1.2303 -0.2697 9 6 1.3495 -2.4041 0.3537 10 6 0.2167 -2.3682 1.1967 11 6 -0.4217 -3.5110 1.5331 12 6 0.0329 -4.7701 1.0536 13 6 -0.5022 -6.0426 1.2997 14 6 0.1331 -7.0611 0.7160 15 8 -0.2279 -8.3623 0.8316 16 16 1.4996 -6.4845 -0.2217 17 6 1.1604 -4.8144 0.2201 18 6 1.8175 -3.6408 -0.1278 19 9 2.9034 -3.6864 -0.9303 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1439 -1.4216 1.5715 22 1 -1.2890 -3.4672 2.1752 23 1 -1.3729 -6.1893 1.9217 24 1 -0.8536 -8.6585 0.1564 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306940088.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:48 Heat of formation + Delta-G solvation = -58.535234 kcal Electronic energy + Delta-G solvation = -13990.565036 eV Core-core repulsion = 11295.450604 eV Total energy + Delta-G solvation = -2695.114432 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.32021 -38.44590 -37.17680 -34.80445 -32.46256 -29.47124 -28.54884 -25.11953 -22.70032 -21.20392 -20.12603 -18.28736 -17.52230 -16.33616 -15.64212 -15.29385 -14.99712 -14.30425 -14.13099 -13.85251 -13.58201 -12.68473 -12.21048 -12.08926 -11.74932 -11.65960 -11.31668 -11.12741 -10.84915 -10.14603 -10.01550 -9.90712 -9.59835 -9.30945 -8.51429 -7.49926 -7.26304 -6.80308 -4.67096 1.54633 2.24593 2.51956 2.77040 2.81202 2.88182 2.91752 3.22387 3.64960 4.24708 4.78980 5.16933 5.62451 5.95811 6.10935 6.27141 6.50795 6.63703 6.67507 6.87802 7.04091 7.30391 7.54959 7.65903 7.69530 7.88772 8.14563 8.32335 8.47015 9.70837 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.050149 B = 0.007266 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.204839 B = 3852.454586 C = 4333.117211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.071 3.929 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.419 4.419 8 H 0.092 0.908 9 C 0.108 3.892 10 C -0.126 4.126 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.090 4.090 14 C -0.056 4.056 15 O -0.457 6.457 16 S 0.012 5.988 17 C -0.087 4.087 18 C -0.028 4.028 19 F -0.156 7.156 20 H 0.291 0.709 21 H 0.133 0.867 22 H 0.103 0.897 23 H 0.130 0.870 24 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -2.510 0.880 3.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.151 4.151 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.447 4.447 8 H 0.110 0.890 9 C 0.102 3.898 10 C -0.146 4.146 11 C -0.092 4.092 12 C -0.189 4.189 13 C -0.122 4.122 14 C -0.215 4.215 15 O -0.264 6.264 16 S 0.271 5.729 17 C -0.203 4.203 18 C -0.056 4.056 19 F -0.135 7.135 20 H 0.103 0.897 21 H 0.151 0.849 22 H 0.121 0.879 23 H 0.147 0.853 24 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.591 -3.160 0.484 3.251 hybrid contribution -0.981 1.224 0.209 1.582 sum -1.572 -1.936 0.693 2.588 Atomic orbital electron populations 1.69852 1.07813 1.30703 1.30827 1.26107 0.94980 1.02198 0.91808 0.86083 0.80075 0.78598 0.80629 1.18406 1.19811 1.18226 1.19651 0.98412 0.90631 1.36008 0.88976 1.17530 0.92040 0.90349 0.89928 1.20812 0.97271 0.97590 0.98913 1.20398 0.98739 0.90737 0.99295 1.17248 0.99947 0.93268 1.08426 1.20206 1.00176 0.91142 1.00644 1.21702 1.02702 0.86397 1.10675 1.84818 1.65141 1.21814 1.54614 1.83900 1.34173 0.99526 1.55329 1.22057 1.00392 0.93937 1.03936 1.16779 0.92456 0.92090 1.04278 1.91284 1.52896 1.97147 1.72223 0.89746 0.84942 0.87851 0.85265 0.77477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.66 10.96 55.54 0.61 -17.05 14 2 C 0.07 1.60 5.14 -17.34 -0.09 1.51 14 3 Si 0.92 16.82 29.59 -169.99 -5.03 11.79 14 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 14 5 H -0.27 -4.79 7.11 56.52 0.40 -4.38 14 6 H -0.26 -4.67 7.11 56.52 0.40 -4.26 14 7 C -0.42 -10.38 8.74 -38.02 -0.33 -10.72 14 8 H 0.09 2.24 7.72 -52.49 -0.41 1.84 14 9 C 0.11 2.76 5.56 -106.81 -0.59 2.16 14 10 C -0.13 -3.00 8.57 -39.53 -0.34 -3.34 14 11 C -0.07 -1.56 9.99 -39.16 -0.39 -1.95 14 12 C -0.18 -4.14 5.88 -106.86 -0.63 -4.77 14 13 C -0.09 -1.78 10.16 -40.50 -0.41 -2.20 14 14 C -0.06 -1.10 7.54 29.07 0.22 -0.88 14 15 O -0.46 -7.54 13.64 -18.27 -0.25 -7.79 14 16 S 0.01 0.25 23.29 -107.50 -2.50 -2.25 14 17 C -0.09 -2.09 6.43 -38.56 -0.25 -2.34 14 18 C -0.03 -0.72 7.33 -38.39 -0.28 -1.00 14 19 F -0.16 -3.99 16.70 2.25 0.04 -3.95 14 20 H 0.29 5.97 8.30 -40.82 -0.34 5.64 14 21 H 0.13 3.09 6.19 -52.49 -0.32 2.77 14 22 H 0.10 1.94 8.06 -52.49 -0.42 1.51 14 23 H 0.13 2.21 8.06 -52.49 -0.42 1.79 14 24 H 0.37 4.21 9.06 45.56 0.41 4.63 14 LS Contribution 238.21 15.07 3.59 3.59 Total: -1.00 -27.08 238.21 -6.94 -34.02 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -0.30 Total: 5.17 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -3.10 Total: -23.51 kcal Atomic # 7 Polarization: -17.66 SS G_CDS: 0.61 Total: -17.05 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.25 Total: -7.79 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.50 Total: -2.25 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.08 -6.94 -34.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306940088.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.513 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds