Wall clock time and date at job start Mon Mar 30 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30928 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48503 * 109.47223 * 90.00465 * 3 2 1 5 5 H 1.48500 * 109.47044 * 210.00571 * 3 2 1 6 6 H 1.48497 * 109.47237 * 330.00597 * 3 2 1 7 7 C 1.39864 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00131 * 206.82707 * 7 2 1 9 9 C 1.41110 * 119.99603 * 26.82322 * 7 2 1 10 10 C 1.39880 * 120.09631 * 25.14147 * 9 7 2 11 11 C 1.40377 * 120.20568 * 180.02562 * 10 9 7 12 12 C 1.45758 * 129.06253 * 179.97438 * 11 10 9 13 13 F 1.35102 * 122.56123 * 359.97438 * 12 11 10 14 14 C 1.31675 * 114.88045 * 179.97438 * 12 11 10 15 15 S 1.75249 * 111.56606 * 0.02562 * 14 12 11 16 16 C 1.40297 * 119.23474 * 0.02562 * 11 10 9 17 17 C 1.40242 * 120.25414 * 0.02926 * 16 11 10 18 18 C 1.37273 * 120.66250 * 359.64948 * 17 16 11 19 19 O 1.35766 * 120.08794 * 180.33398 * 18 17 16 20 20 H 0.97000 * 119.99676 * 185.78784 * 1 2 3 21 21 H 1.07995 * 119.89843 * 359.97382 * 10 9 7 22 22 H 1.07995 * 124.21950 * 180.02562 * 14 12 11 23 23 H 1.08007 * 119.66734 * 180.02562 * 17 16 11 24 24 H 0.96697 * 114.00121 * 270.62887 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.4908 2.0464 1.4001 5 1 3.5407 1.4403 -0.7002 6 1 1.4406 2.6527 -0.6999 7 6 2.0087 -1.2112 -0.0005 8 1 3.0014 -1.2617 0.4215 9 6 1.4169 -2.3673 -0.5525 10 6 0.4260 -2.2483 -1.5326 11 6 -0.1645 -3.3968 -2.0829 12 6 -1.2019 -3.4979 -3.1018 13 9 -1.7604 -2.4126 -3.6810 14 6 -1.5530 -4.7277 -3.4148 15 16 -0.6483 -5.9108 -2.4912 16 6 0.2505 -4.6609 -1.6379 17 6 1.2438 -4.7727 -0.6542 18 6 1.8280 -3.6519 -0.1186 19 8 2.7933 -3.7738 0.8283 20 1 -0.4849 -0.8358 0.0847 21 1 0.1137 -1.2699 -1.8664 22 1 -2.3048 -4.9764 -4.1492 23 1 1.5564 -5.7507 -0.3189 24 1 2.4550 -3.7989 1.7338 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306952852.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:37 Heat of formation + Delta-G solvation = -64.006295 kcal Electronic energy + Delta-G solvation = -14175.129158 eV Core-core repulsion = 11479.777483 eV Total energy + Delta-G solvation = -2695.351675 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.28538 -38.68808 -36.24705 -34.74592 -32.54979 -29.58744 -28.09030 -25.33706 -22.44171 -21.66832 -20.13518 -18.24029 -17.40301 -16.77285 -15.88934 -15.14698 -15.03639 -14.58883 -14.24250 -13.80648 -13.57159 -12.72387 -12.41023 -12.08963 -12.02326 -11.64245 -11.24299 -10.99704 -10.50706 -10.40391 -10.12507 -9.97648 -9.39691 -9.09430 -8.58313 -7.72359 -7.40632 -6.98571 -4.63967 1.43384 2.20994 2.33913 2.69095 2.86436 3.05690 3.14608 3.28485 3.86773 4.20167 4.82563 4.97382 5.30460 5.40512 5.71965 6.07997 6.29172 6.48503 6.66270 6.94034 7.01270 7.22034 7.37506 7.49047 7.77331 7.83561 8.21962 8.54432 8.73815 9.79188 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.009359 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.822021 B = 2990.931987 C = 3866.363216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.035 3.965 3 Si 1.068 2.932 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.491 4.491 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.185 4.185 11 C -0.061 4.061 12 C 0.103 3.897 13 F -0.133 7.133 14 C -0.252 4.252 15 S 0.054 5.946 16 C -0.227 4.227 17 C -0.075 4.075 18 C 0.030 3.970 19 O -0.491 6.491 20 H 0.301 0.699 21 H 0.117 0.883 22 H 0.163 0.837 23 H 0.108 0.892 24 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -4.258 -0.982 4.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.188 4.188 3 Si 0.891 3.109 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.518 4.518 8 H 0.107 0.893 9 C 0.071 3.929 10 C -0.208 4.208 11 C -0.067 4.067 12 C 0.069 3.931 13 F -0.112 7.112 14 C -0.387 4.387 15 S 0.312 5.688 16 C -0.341 4.341 17 C -0.098 4.098 18 C -0.017 4.017 19 O -0.299 6.299 20 H 0.115 0.885 21 H 0.135 0.865 22 H 0.180 0.820 23 H 0.126 0.874 24 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.706 -4.126 -1.548 4.464 hybrid contribution -0.414 -0.078 0.224 0.477 sum -1.120 -4.204 -1.324 4.548 Atomic orbital electron populations 1.70495 1.08262 1.34573 1.26652 1.27233 0.95574 1.04782 0.91243 0.83594 0.75845 0.73272 0.78213 1.19957 1.19708 1.19571 1.20582 1.03968 0.93585 1.33710 0.89259 1.17691 0.91310 0.92339 0.91565 1.20772 1.03938 0.95552 1.00533 1.18773 0.96585 0.94540 0.96822 1.17557 0.96325 0.82714 0.96480 1.91443 1.83551 1.53567 1.82625 1.24467 1.09205 0.95707 1.09299 1.83304 1.38241 1.08003 1.39226 1.21300 1.08852 0.94010 1.09979 1.20091 0.95157 0.97458 0.97066 1.18214 0.95784 0.91703 0.96005 1.84757 1.32370 1.95710 1.17024 0.88513 0.86464 0.81955 0.87390 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.76 12.31 55.54 0.68 -19.07 14 2 C 0.04 0.85 4.88 -17.33 -0.08 0.77 14 3 Si 1.07 20.60 30.01 -169.99 -5.10 15.50 14 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 14 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 7 C -0.49 -12.35 8.62 -37.88 -0.33 -12.68 14 8 H 0.09 2.22 7.71 -52.49 -0.40 1.81 14 9 C 0.08 1.92 5.30 -106.88 -0.57 1.35 14 10 C -0.19 -4.70 8.03 -38.16 -0.31 -5.01 14 11 C -0.06 -1.45 6.03 -105.32 -0.64 -2.09 14 12 C 0.10 2.19 7.56 -38.45 -0.29 1.90 14 13 F -0.13 -2.84 17.32 2.25 0.04 -2.80 14 14 C -0.25 -4.61 10.99 28.86 0.32 -4.29 14 15 S 0.05 0.98 23.23 -107.50 -2.50 -1.52 14 16 C -0.23 -5.00 6.50 -38.06 -0.25 -5.25 14 17 C -0.07 -1.63 9.97 -39.18 -0.39 -2.02 14 18 C 0.03 0.69 6.71 -38.62 -0.26 0.44 14 19 O -0.49 -10.29 12.77 -19.01 -0.24 -10.54 14 20 H 0.30 7.86 6.80 -40.82 -0.28 7.59 14 21 H 0.12 3.11 6.47 -52.49 -0.34 2.77 14 22 H 0.16 2.41 8.06 -52.49 -0.42 1.99 14 23 H 0.11 2.07 8.06 -52.48 -0.42 1.65 14 24 H 0.37 6.04 9.06 45.56 0.41 6.45 14 LS Contribution 237.69 15.07 3.58 3.58 Total: -1.00 -27.01 237.69 -6.57 -33.59 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -0.25 Total: 8.13 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.79 Total: -26.88 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.68 Total: -19.07 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.24 Total: -10.54 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.10 Total: 15.50 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.01 -6.57 -33.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306952852.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.417 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds