Wall clock time and date at job start Mon Mar 30 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30928 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48503 * 109.47223 * 90.00465 * 3 2 1 5 5 H 1.48500 * 109.47044 * 210.00571 * 3 2 1 6 6 H 1.48497 * 109.47237 * 330.00597 * 3 2 1 7 7 C 1.39864 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00131 * 206.82707 * 7 2 1 9 9 C 1.41110 * 119.99603 * 26.82322 * 7 2 1 10 10 C 1.39880 * 120.09631 * 25.14147 * 9 7 2 11 11 C 1.40377 * 120.20568 * 180.02562 * 10 9 7 12 12 C 1.45758 * 129.06253 * 179.97438 * 11 10 9 13 13 F 1.35102 * 122.56123 * 359.97438 * 12 11 10 14 14 C 1.31675 * 114.88045 * 179.97438 * 12 11 10 15 15 S 1.75249 * 111.56606 * 0.02562 * 14 12 11 16 16 C 1.40297 * 119.23474 * 0.02562 * 11 10 9 17 17 C 1.40242 * 120.25414 * 0.02926 * 16 11 10 18 18 C 1.37273 * 120.66250 * 359.64948 * 17 16 11 19 19 O 1.35766 * 120.08794 * 180.33398 * 18 17 16 20 20 H 0.97000 * 119.99676 * 185.78784 * 1 2 3 21 21 H 1.07995 * 119.89843 * 359.97382 * 10 9 7 22 22 H 1.07995 * 124.21950 * 180.02562 * 14 12 11 23 23 H 1.08007 * 119.66734 * 180.02562 * 17 16 11 24 24 H 0.96697 * 114.00121 * 270.62887 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.4908 2.0464 1.4001 5 1 3.5407 1.4403 -0.7002 6 1 1.4406 2.6527 -0.6999 7 6 2.0087 -1.2112 -0.0005 8 1 3.0014 -1.2617 0.4215 9 6 1.4169 -2.3673 -0.5525 10 6 0.4260 -2.2483 -1.5326 11 6 -0.1645 -3.3968 -2.0829 12 6 -1.2019 -3.4979 -3.1018 13 9 -1.7604 -2.4126 -3.6810 14 6 -1.5530 -4.7277 -3.4148 15 16 -0.6483 -5.9108 -2.4912 16 6 0.2505 -4.6609 -1.6379 17 6 1.2438 -4.7727 -0.6542 18 6 1.8280 -3.6519 -0.1186 19 8 2.7933 -3.7738 0.8283 20 1 -0.4849 -0.8358 0.0847 21 1 0.1137 -1.2699 -1.8664 22 1 -2.3048 -4.9764 -4.1492 23 1 1.5564 -5.7507 -0.3189 24 1 2.4550 -3.7989 1.7338 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306952852.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:37 Heat of formation + Delta-G solvation = -80.545964 kcal Electronic energy + Delta-G solvation = -14175.846371 eV Core-core repulsion = 11479.777483 eV Total energy + Delta-G solvation = -2696.068889 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.88739 -40.44512 -37.93967 -36.52565 -34.23630 -31.38858 -29.81818 -27.15779 -24.11639 -23.45211 -21.83228 -20.00953 -19.12627 -18.41289 -17.51115 -16.83692 -16.69881 -16.31097 -15.90460 -15.42329 -15.26593 -14.54927 -14.05763 -13.79915 -13.68865 -13.33587 -12.85829 -12.65443 -12.03376 -12.01205 -11.83972 -11.65946 -11.11620 -10.85150 -10.32945 -9.53049 -9.23547 -8.57939 -6.52791 -0.23498 0.53846 0.66825 1.03152 1.16987 1.47861 1.57880 1.78679 2.25946 2.43784 3.16500 3.22728 3.65731 3.85428 4.03947 4.45589 4.62929 4.74672 4.93971 5.14590 5.22228 5.43554 5.52898 5.64458 5.92362 5.99583 6.40812 6.71808 7.08843 7.89337 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.009359 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.822021 B = 2990.931987 C = 3866.363216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.004 3.996 3 Si 1.116 2.884 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.084 0.916 9 C 0.053 3.947 10 C -0.216 4.216 11 C -0.078 4.078 12 C 0.057 3.943 13 F -0.141 7.141 14 C -0.223 4.223 15 S 0.140 5.860 16 C -0.243 4.243 17 C -0.075 4.075 18 C 0.024 3.976 19 O -0.495 6.495 20 H 0.285 0.715 21 H 0.091 0.909 22 H 0.205 0.795 23 H 0.140 0.860 24 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 -6.288 -1.455 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.214 4.214 3 Si 0.933 3.067 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.103 0.897 9 C 0.048 3.952 10 C -0.239 4.239 11 C -0.085 4.085 12 C 0.024 3.976 13 F -0.120 7.120 14 C -0.358 4.358 15 S 0.399 5.601 16 C -0.357 4.357 17 C -0.098 4.098 18 C -0.023 4.023 19 O -0.305 6.305 20 H 0.097 0.903 21 H 0.109 0.891 22 H 0.222 0.778 23 H 0.157 0.843 24 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.825 -6.197 -1.998 6.563 hybrid contribution -0.439 0.244 0.308 0.589 sum -1.264 -5.953 -1.690 6.316 Atomic orbital electron populations 1.70594 1.09045 1.33448 1.29370 1.28541 0.95522 1.07703 0.89617 0.83024 0.74776 0.69548 0.79388 1.17680 1.18931 1.19639 1.20679 1.04099 0.94656 1.35654 0.89745 1.18020 0.91719 0.93625 0.91794 1.20609 1.05745 0.95327 1.02192 1.19114 0.97167 0.94758 0.97429 1.17605 0.97996 0.83805 0.98224 1.91413 1.83696 1.54150 1.82779 1.25073 1.08057 0.94560 1.08070 1.83053 1.35582 1.04774 1.36651 1.21867 1.08700 0.95537 1.09601 1.20388 0.94592 0.98266 0.96543 1.18373 0.95762 0.91572 0.96580 1.84676 1.32162 1.95558 1.18094 0.90276 0.89123 0.77824 0.84265 0.75597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.88 12.31 21.82 0.27 -42.61 14 2 C 0.00 0.21 4.88 85.22 0.42 0.62 14 3 Si 1.12 42.35 30.01 68.60 2.06 44.40 14 4 H -0.25 -8.65 7.11 99.48 0.71 -7.94 14 5 H -0.26 -9.62 7.11 99.48 0.71 -8.91 14 6 H -0.27 -10.23 7.11 99.48 0.71 -9.53 14 7 C -0.52 -27.40 8.62 23.37 0.20 -27.20 14 8 H 0.08 4.34 7.71 -2.92 -0.02 4.32 14 9 C 0.05 2.78 5.30 -21.33 -0.11 2.66 14 10 C -0.22 -11.48 8.03 23.19 0.19 -11.30 14 11 C -0.08 -3.73 6.03 -20.31 -0.12 -3.85 14 12 C 0.06 2.38 7.56 23.55 0.18 2.55 14 13 F -0.14 -6.08 17.32 44.97 0.78 -5.30 14 14 C -0.22 -7.30 10.99 67.15 0.74 -6.56 14 15 S 0.14 4.44 23.23 -56.49 -1.31 3.13 14 16 C -0.24 -10.24 6.50 23.26 0.15 -10.08 14 17 C -0.08 -3.15 9.97 22.53 0.22 -2.93 14 18 C 0.02 1.12 6.71 22.89 0.15 1.28 14 19 O -0.49 -20.43 12.77 -90.93 -1.16 -21.59 14 20 H 0.28 15.90 6.80 -92.71 -0.63 15.27 14 21 H 0.09 5.17 6.47 -2.91 -0.02 5.15 14 22 H 0.20 4.92 8.06 -2.91 -0.02 4.90 14 23 H 0.14 4.86 8.06 -2.91 -0.02 4.84 14 24 H 0.39 12.43 9.06 -74.06 -0.67 11.76 14 Total: -1.00 -60.29 237.69 3.38 -56.92 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.73 Total: 19.86 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 2.01 Total: -54.80 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.27 Total: -42.61 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.16 Total: -21.59 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.78 Total: -5.30 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.06 Total: 44.40 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.31 Total: 3.13 kcal Total: -60.29 3.38 -56.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306952852.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.629 kcal (2) G-P(sol) polarization free energy of solvation -60.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds