Wall clock time and date at job start Mon Mar 30 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86806 * 120.00146 * 2 1 4 4 H 1.48506 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46709 * 299.99509 * 3 2 1 6 6 H 1.48490 * 109.47437 * 59.99489 * 3 2 1 7 7 C 1.39882 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00398 * 163.34577 * 7 2 1 9 9 C 1.40956 * 119.99733 * 343.35166 * 7 2 1 10 10 C 1.40499 * 120.10101 * 334.00853 * 9 7 2 11 11 C 1.37853 * 119.88620 * 179.73941 * 10 9 7 12 12 C 1.37851 * 120.74343 * 0.51772 * 11 10 9 13 13 C 1.41348 * 120.89638 * 359.76342 * 12 11 10 14 14 C 1.45493 * 129.11684 * 179.97438 * 13 12 11 15 15 F 1.35097 * 122.63038 * 0.02562 * 14 13 12 16 16 C 1.32550 * 114.74386 * 180.02562 * 14 13 12 17 17 O 1.35847 * 124.35985 * 179.97438 * 16 14 13 18 18 S 1.75292 * 111.28435 * 0.02562 * 16 14 13 19 19 C 1.39487 * 119.00175 * 359.97438 * 13 12 11 20 20 H 0.97006 * 120.00126 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.06097 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.62894 * 180.25896 * 11 10 9 23 23 H 1.07993 * 119.54871 * 179.73908 * 12 11 10 24 24 H 0.96692 * 114.00093 * 90.00088 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8842 2.3965 1.2123 7 6 2.0083 -1.2114 0.0005 8 1 3.0543 -1.2311 -0.2675 9 6 1.3479 -2.4064 0.3508 10 6 0.2235 -2.3694 1.1925 11 6 -0.4223 -3.5402 1.5279 12 6 0.0285 -4.7540 1.0549 13 6 1.1600 -4.8293 0.2111 14 6 1.7845 -6.0006 -0.3846 15 9 1.3203 -7.2537 -0.1865 16 6 2.8448 -5.7418 -1.1368 17 8 3.5750 -6.6872 -1.7838 18 16 3.1842 -4.0229 -1.1883 19 6 1.8204 -3.6522 -0.1412 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1371 -1.4249 1.5724 22 1 -1.2887 -3.5065 2.1718 23 1 -0.4896 -5.6597 1.3333 24 1 3.2643 -6.8797 -2.6790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306953288.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:48 Heat of formation + Delta-G solvation = -56.179193 kcal Electronic energy + Delta-G solvation = -14031.843127 eV Core-core repulsion = 11336.830860 eV Total energy + Delta-G solvation = -2695.012266 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.26179 -38.18868 -37.35465 -34.35831 -32.57358 -30.11446 -27.51241 -25.55202 -22.51402 -21.28116 -20.22753 -18.35239 -17.52137 -16.48411 -15.79283 -15.35602 -15.29247 -14.87126 -14.28009 -13.57068 -13.39894 -12.93494 -12.23474 -12.22512 -11.90659 -11.51680 -11.29303 -10.90922 -10.66166 -10.29816 -9.89933 -9.83974 -9.46405 -9.40830 -8.33762 -7.49031 -7.04993 -6.84542 -4.59389 1.45655 2.10946 2.48676 2.85122 2.92606 2.96765 3.02524 3.15863 3.76450 4.37540 4.47969 4.96644 5.29916 5.90149 5.91134 6.29250 6.38913 6.67369 6.92354 6.94283 7.08994 7.34721 7.61806 7.64377 7.77209 7.91224 8.29734 8.53920 8.58444 9.91823 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.008729 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.416101 B = 3207.027485 C = 3953.810099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.451 4.451 8 H 0.084 0.916 9 C 0.146 3.854 10 C -0.158 4.158 11 C -0.084 4.084 12 C -0.202 4.202 13 C -0.066 4.066 14 C 0.068 3.932 15 F -0.132 7.132 16 C -0.042 4.042 17 O -0.453 6.453 18 S 0.081 5.919 19 C -0.196 4.196 20 H 0.286 0.714 21 H 0.128 0.872 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -2.664 -1.694 3.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.140 3.860 10 C -0.181 4.181 11 C -0.104 4.104 12 C -0.225 4.225 13 C -0.073 4.073 14 C 0.032 3.968 15 F -0.111 7.111 16 C -0.202 4.202 17 O -0.261 6.261 18 S 0.342 5.658 19 C -0.312 4.312 20 H 0.097 0.903 21 H 0.146 0.854 22 H 0.118 0.882 23 H 0.116 0.884 24 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.998 -1.761 -1.938 3.980 hybrid contribution -1.137 -0.476 0.152 1.242 sum 1.861 -2.237 -1.786 3.414 Atomic orbital electron populations 1.69830 1.07656 1.29830 1.33099 1.25933 0.94822 1.01620 0.91905 0.86171 0.81099 0.80265 0.78866 1.18067 1.19660 1.19367 1.19549 0.97900 0.90909 1.39622 0.89811 1.16955 0.91423 0.88901 0.88710 1.21247 0.98874 0.97284 1.00693 1.20540 0.98392 0.92599 0.98834 1.20120 0.99152 0.97133 1.06053 1.18352 0.98364 0.89144 1.01412 1.18201 0.95502 0.79824 1.03276 1.91391 1.88307 1.37574 1.93816 1.22096 0.97857 0.94378 1.05893 1.84856 1.54183 1.55135 1.31932 1.83788 1.32842 0.95090 1.54098 1.22212 1.02059 0.97184 1.09719 0.90340 0.85390 0.88153 0.88429 0.76310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.62 10.97 55.54 0.61 -18.01 14 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 14 3 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 14 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 5 H -0.27 -5.12 7.11 56.52 0.40 -4.71 14 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.45 -11.21 8.82 -37.94 -0.33 -11.54 14 8 H 0.08 2.03 7.75 -52.49 -0.41 1.62 14 9 C 0.15 3.70 5.58 -106.56 -0.59 3.11 14 10 C -0.16 -3.84 8.66 -38.87 -0.34 -4.18 14 11 C -0.08 -1.87 9.97 -39.86 -0.40 -2.27 14 12 C -0.20 -4.54 10.10 -38.54 -0.39 -4.93 14 13 C -0.07 -1.55 6.04 -105.36 -0.64 -2.19 14 14 C 0.07 1.46 7.59 -38.60 -0.29 1.17 14 15 F -0.13 -2.73 17.30 2.25 0.04 -2.69 14 16 C -0.04 -0.83 7.47 28.82 0.22 -0.62 14 17 O -0.45 -7.66 13.63 -19.26 -0.26 -7.92 14 18 S 0.08 1.70 22.82 -107.50 -2.45 -0.75 14 19 C -0.20 -4.75 6.36 -37.66 -0.24 -4.99 14 20 H 0.29 6.12 8.30 -40.82 -0.34 5.78 14 21 H 0.13 3.14 6.20 -52.49 -0.33 2.81 14 22 H 0.10 1.92 8.06 -52.49 -0.42 1.50 14 23 H 0.10 1.99 8.06 -52.49 -0.42 1.56 14 24 H 0.38 4.41 9.06 45.56 0.41 4.83 14 LS Contribution 238.78 15.07 3.60 3.60 Total: -1.00 -26.97 238.78 -6.89 -33.86 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -0.30 Total: 4.25 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -3.10 Total: -24.73 kcal Atomic # 7 Polarization: -18.62 SS G_CDS: 0.61 Total: -18.01 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.26 Total: -7.92 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.45 Total: -0.75 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.97 -6.89 -33.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306953288.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.317 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds