Wall clock time and date at job start Mon Mar 30 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86806 * 120.00146 * 2 1 4 4 H 1.48506 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46709 * 299.99509 * 3 2 1 6 6 H 1.48490 * 109.47437 * 59.99489 * 3 2 1 7 7 C 1.39882 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00398 * 163.34577 * 7 2 1 9 9 C 1.40956 * 119.99733 * 343.35166 * 7 2 1 10 10 C 1.40499 * 120.10101 * 334.00853 * 9 7 2 11 11 C 1.37853 * 119.88620 * 179.73941 * 10 9 7 12 12 C 1.37851 * 120.74343 * 0.51772 * 11 10 9 13 13 C 1.41348 * 120.89638 * 359.76342 * 12 11 10 14 14 C 1.45493 * 129.11684 * 179.97438 * 13 12 11 15 15 F 1.35097 * 122.63038 * 0.02562 * 14 13 12 16 16 C 1.32550 * 114.74386 * 180.02562 * 14 13 12 17 17 O 1.35847 * 124.35985 * 179.97438 * 16 14 13 18 18 S 1.75292 * 111.28435 * 0.02562 * 16 14 13 19 19 C 1.39487 * 119.00175 * 359.97438 * 13 12 11 20 20 H 0.97006 * 120.00126 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.06097 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.62894 * 180.25896 * 11 10 9 23 23 H 1.07993 * 119.54871 * 179.73908 * 12 11 10 24 24 H 0.96692 * 114.00093 * 90.00088 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8842 2.3965 1.2123 7 6 2.0083 -1.2114 0.0005 8 1 3.0543 -1.2311 -0.2675 9 6 1.3479 -2.4064 0.3508 10 6 0.2235 -2.3694 1.1925 11 6 -0.4223 -3.5402 1.5279 12 6 0.0285 -4.7540 1.0549 13 6 1.1600 -4.8293 0.2111 14 6 1.7845 -6.0006 -0.3846 15 9 1.3203 -7.2537 -0.1865 16 6 2.8448 -5.7418 -1.1368 17 8 3.5750 -6.6872 -1.7838 18 16 3.1842 -4.0229 -1.1883 19 6 1.8204 -3.6522 -0.1412 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1371 -1.4249 1.5724 22 1 -1.2887 -3.5065 2.1718 23 1 -0.4896 -5.6597 1.3333 24 1 3.2643 -6.8797 -2.6790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306953288.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:48 Heat of formation + Delta-G solvation = -72.205395 kcal Electronic energy + Delta-G solvation = -14032.538075 eV Core-core repulsion = 11336.830860 eV Total energy + Delta-G solvation = -2695.707215 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.87416 -39.87776 -38.88219 -36.09304 -34.27332 -31.90374 -29.20834 -27.35040 -24.21258 -23.02350 -21.91253 -19.99671 -19.14275 -18.16940 -17.42947 -17.07679 -16.94342 -16.49605 -15.83952 -15.26895 -15.07829 -14.56381 -13.98209 -13.90317 -13.53390 -13.16692 -12.88063 -12.65021 -12.26993 -11.94888 -11.55810 -11.51651 -11.15096 -11.12813 -10.08999 -9.23264 -8.78997 -8.56397 -6.43219 -0.20422 0.45986 0.72842 1.18031 1.21949 1.40524 1.53515 1.55455 2.17924 2.62094 2.97574 3.36936 3.47754 4.22622 4.25325 4.57843 4.72903 4.90671 5.14907 5.21222 5.35158 5.58845 5.81833 5.98036 6.09374 6.42688 6.48520 6.73187 6.77478 8.21047 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.008729 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.416101 B = 3207.027485 C = 3953.810099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.480 4.480 8 H 0.080 0.920 9 C 0.121 3.879 10 C -0.182 4.182 11 C -0.082 4.082 12 C -0.211 4.211 13 C -0.079 4.079 14 C 0.043 3.957 15 F -0.128 7.128 16 C -0.014 4.014 17 O -0.450 6.450 18 S 0.104 5.896 19 C -0.229 4.229 20 H 0.295 0.705 21 H 0.119 0.881 22 H 0.130 0.870 23 H 0.118 0.882 24 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -2.794 -2.165 4.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.508 4.508 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.205 4.205 11 C -0.101 4.101 12 C -0.233 4.233 13 C -0.085 4.085 14 C 0.008 3.992 15 F -0.107 7.107 16 C -0.176 4.176 17 O -0.262 6.262 18 S 0.364 5.636 19 C -0.344 4.344 20 H 0.106 0.894 21 H 0.137 0.863 22 H 0.147 0.853 23 H 0.136 0.864 24 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.556 -1.917 -2.429 4.714 hybrid contribution -1.290 -0.559 0.231 1.425 sum 2.266 -2.476 -2.197 4.012 Atomic orbital electron populations 1.69855 1.08895 1.31259 1.33123 1.26720 0.95529 1.04399 0.90956 0.85148 0.79447 0.75953 0.79271 1.18204 1.18835 1.18461 1.19737 0.97962 0.91921 1.41175 0.90178 1.17293 0.92165 0.89773 0.89269 1.21274 0.99712 0.97721 1.01777 1.20828 0.98815 0.91889 0.98564 1.20442 0.99137 0.97956 1.05791 1.18696 0.98629 0.89794 1.01427 1.18097 0.96616 0.79682 1.04795 1.91392 1.88382 1.36998 1.93966 1.22042 0.96502 0.94413 1.04619 1.84786 1.53730 1.53827 1.33847 1.83608 1.31353 0.95653 1.52984 1.22479 1.03741 0.97237 1.10946 0.89392 0.86333 0.85262 0.86448 0.72889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.81 10.97 21.82 0.24 -38.57 14 2 C 0.04 1.94 5.14 85.23 0.44 2.38 14 3 Si 0.98 35.39 29.59 68.60 2.03 37.42 14 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 5 H -0.26 -9.12 7.11 99.48 0.71 -8.41 14 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 7 C -0.48 -24.22 8.82 23.33 0.21 -24.01 14 8 H 0.08 3.95 7.75 -2.92 -0.02 3.93 14 9 C 0.12 6.24 5.58 -21.12 -0.12 6.12 14 10 C -0.18 -9.01 8.66 22.73 0.20 -8.81 14 11 C -0.08 -3.62 9.97 22.09 0.22 -3.40 14 12 C -0.21 -9.36 10.10 22.94 0.23 -9.12 14 13 C -0.08 -3.66 6.04 -20.34 -0.12 -3.78 14 14 C 0.04 1.82 7.59 22.99 0.17 1.99 14 15 F -0.13 -5.10 17.30 44.97 0.78 -4.32 14 16 C -0.01 -0.54 7.47 66.67 0.50 -0.05 14 17 O -0.45 -13.77 13.63 -91.83 -1.25 -15.02 14 18 S 0.10 4.23 22.82 -56.49 -1.29 2.94 14 19 C -0.23 -11.11 6.36 23.51 0.15 -10.96 14 20 H 0.30 12.63 8.30 -92.70 -0.77 11.86 14 21 H 0.12 5.98 6.20 -2.91 -0.02 5.96 14 22 H 0.13 4.79 8.06 -2.91 -0.02 4.77 14 23 H 0.12 4.62 8.06 -2.91 -0.02 4.59 14 24 H 0.41 7.93 9.06 -74.06 -0.67 7.26 14 Total: -1.00 -57.02 238.78 2.97 -54.05 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.59 Total: 13.15 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 1.87 Total: -49.64 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.24 Total: -38.57 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.25 Total: -15.02 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.29 Total: 2.94 kcal Total: -57.02 2.97 -54.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306953288.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.159 kcal (2) G-P(sol) polarization free energy of solvation -57.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds