Wall clock time and date at job start Mon Mar 30 2020 05:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30935 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48500 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46975 * 299.99729 * 3 2 1 6 6 H 1.48495 * 109.47132 * 59.99487 * 3 2 1 7 7 C 1.39842 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 162.52728 * 7 2 1 9 9 C 1.40841 * 119.99968 * 342.52517 * 7 2 1 10 10 C 1.40409 * 120.04498 * 334.34749 * 9 7 2 11 11 C 1.38121 * 119.87263 * 180.02562 * 10 9 7 12 12 O 1.36004 * 119.69633 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.60724 * 359.97438 * 11 10 9 14 14 F 1.35100 * 119.59930 * 179.97438 * 13 11 10 15 15 C 1.41560 * 120.79930 * 0.04004 * 13 11 10 16 16 C 1.45460 * 129.11156 * 179.97438 * 15 13 11 17 17 C 1.31878 * 114.88252 * 180.22533 * 16 15 13 18 18 S 1.75309 * 111.31540 * 359.62814 * 17 16 15 19 19 C 1.39317 * 119.02394 * 359.96169 * 15 13 11 20 20 H 0.96998 * 119.99559 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.06181 * 0.02562 * 10 9 7 22 22 H 0.96697 * 114.00113 * 90.00207 * 12 11 10 23 23 H 1.08001 * 122.55714 * 359.95321 * 16 15 13 24 24 H 1.08002 * 124.34427 * 179.75017 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.7034 1.3463 0.0006 5 1 1.8847 2.3964 -1.2125 6 1 1.8846 2.3965 1.2124 7 6 2.0085 -1.2111 0.0005 8 1 3.0512 -1.2328 -0.2803 9 6 1.3530 -2.4025 0.3673 10 6 0.2357 -2.3574 1.2165 11 6 -0.4041 -3.5279 1.5744 12 8 -1.4857 -3.4801 2.3976 13 6 0.0461 -4.7514 1.1021 14 9 -0.5948 -5.8838 1.4656 15 6 1.1700 -4.8284 0.2449 16 6 1.7914 -6.0012 -0.3505 17 6 2.8399 -5.7486 -1.1095 18 16 3.1735 -4.0291 -1.1837 19 6 1.8222 -3.6532 -0.1218 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1226 -1.4092 1.5891 22 1 -2.3294 -3.3907 1.9336 23 1 1.4248 -7.0027 -0.1803 24 1 3.4177 -6.5040 -1.6213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306954082.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:53 Heat of formation + Delta-G solvation = -77.596820 kcal Electronic energy + Delta-G solvation = -14215.795826 eV Core-core repulsion = 11519.854822 eV Total energy + Delta-G solvation = -2695.941004 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.35090 -40.09394 -38.16246 -36.56019 -34.27925 -31.12355 -29.55334 -27.22630 -24.38028 -23.11719 -21.72706 -19.51795 -18.73136 -18.49757 -17.78597 -16.82691 -16.38851 -16.33859 -15.58154 -15.13877 -14.88939 -14.61357 -14.06779 -13.67599 -13.45798 -13.17568 -12.92442 -12.71749 -12.40600 -12.06537 -11.61827 -11.44093 -11.32436 -11.01577 -9.99431 -9.25333 -8.87301 -8.50695 -6.47772 0.04747 0.46621 0.92672 1.31252 1.36962 1.39460 1.54431 1.63754 2.14484 2.45727 3.23916 3.38339 3.84843 4.03651 4.42537 4.55250 4.72718 4.99470 5.03379 5.15316 5.27270 5.47905 5.68069 5.73229 5.94040 6.23475 6.60970 6.63477 6.95354 8.12433 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.011079 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.191784 B = 2526.755167 C = 3652.221555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.089 0.911 9 C 0.127 3.873 10 C -0.205 4.205 11 C 0.110 3.890 12 O -0.506 6.506 13 C -0.071 4.071 14 F -0.160 7.160 15 C -0.072 4.072 16 C -0.142 4.142 17 C -0.179 4.179 18 S 0.079 5.921 19 C -0.232 4.232 20 H 0.298 0.702 21 H 0.126 0.874 22 H 0.399 0.601 23 H 0.154 0.846 24 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 -2.312 -2.543 4.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.107 0.893 9 C 0.121 3.879 10 C -0.229 4.229 11 C 0.064 3.936 12 O -0.318 6.318 13 C -0.094 4.094 14 F -0.140 7.140 15 C -0.080 4.080 16 C -0.173 4.173 17 C -0.313 4.313 18 S 0.341 5.659 19 C -0.347 4.347 20 H 0.109 0.891 21 H 0.144 0.856 22 H 0.256 0.744 23 H 0.171 0.829 24 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.237 -1.453 -2.882 5.326 hybrid contribution -1.713 -0.326 0.599 1.843 sum 2.525 -1.779 -2.283 3.841 Atomic orbital electron populations 1.69870 1.09129 1.31629 1.31704 1.26852 0.95567 1.04786 0.90817 0.85079 0.79587 0.75470 0.79321 1.17754 1.18543 1.18629 1.19816 0.98470 0.91700 1.39128 0.89329 1.17181 0.91132 0.90649 0.88973 1.21094 1.02058 0.96233 1.03493 1.18114 0.91016 0.91132 0.93357 1.84683 1.16446 1.96001 1.34633 1.17486 1.00160 0.81380 1.10422 1.91252 1.81490 1.49772 1.91438 1.19187 0.95939 0.93767 0.99143 1.20962 0.97785 0.98016 1.00543 1.25418 1.01785 0.99639 1.04466 1.83409 1.30952 1.00564 1.50954 1.22834 1.05413 0.96541 1.09939 0.89131 0.85602 0.74399 0.82866 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.40 10.99 21.81 0.24 -38.16 14 2 C 0.04 1.79 5.12 85.21 0.44 2.22 14 3 Si 0.99 34.90 29.59 68.60 2.03 36.93 14 4 H -0.25 -8.84 7.11 99.48 0.71 -8.14 14 5 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 7 C -0.46 -23.23 8.80 23.30 0.21 -23.03 14 8 H 0.09 4.27 7.75 -2.91 -0.02 4.25 14 9 C 0.13 6.62 5.58 -21.11 -0.12 6.50 14 10 C -0.21 -10.70 8.58 22.77 0.20 -10.51 14 11 C 0.11 5.44 6.67 22.34 0.15 5.59 14 12 O -0.51 -22.00 13.32 -93.59 -1.25 -23.25 14 13 C -0.07 -3.49 7.39 23.19 0.17 -3.32 14 14 F -0.16 -7.46 17.02 44.97 0.77 -6.69 14 15 C -0.07 -3.36 6.04 -20.34 -0.12 -3.48 14 16 C -0.14 -5.33 10.33 23.31 0.24 -5.09 14 17 C -0.18 -5.80 11.03 67.00 0.74 -5.06 14 18 S 0.08 3.04 22.82 -56.49 -1.29 1.75 14 19 C -0.23 -11.24 6.36 23.53 0.15 -11.09 14 20 H 0.30 12.68 8.30 -92.71 -0.77 11.91 14 21 H 0.13 6.72 6.19 -2.91 -0.02 6.70 14 22 H 0.40 13.30 9.06 -74.06 -0.67 12.63 14 23 H 0.15 4.95 8.06 -2.91 -0.02 4.93 14 24 H 0.20 4.51 8.06 -2.91 -0.02 4.49 14 Total: -1.00 -59.39 238.39 3.14 -56.25 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.59 Total: 20.43 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 2.05 Total: -47.27 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.24 Total: -38.16 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.25 Total: -23.25 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.77 Total: -6.69 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.29 Total: 1.75 kcal Total: -59.39 3.14 -56.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306954082.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.343 kcal (2) G-P(sol) polarization free energy of solvation -59.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds