Wall clock time and date at job start Mon Mar 30 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30938 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48504 * 109.46851 * 239.99770 * 3 2 1 5 5 H 1.48496 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47221 * 119.99916 * 3 2 1 7 7 C 1.39784 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00070 * 163.12113 * 7 2 1 9 9 C 1.40964 * 120.00230 * 343.12037 * 7 2 1 10 10 C 1.40457 * 120.18796 * 334.39598 * 9 7 2 11 11 C 1.38845 * 120.02175 * 179.97438 * 10 9 7 12 12 S 1.76047 * 130.38687 * 180.02562 * 11 10 9 13 13 C 1.75466 * 91.60508 * 179.81616 * 12 11 10 14 14 C 1.33028 * 110.80722 * 0.33144 * 13 12 11 15 15 O 1.36111 * 122.12332 * 179.86349 * 14 13 12 16 16 C 1.40365 * 120.15937 * 0.02562 * 11 10 9 17 17 C 1.42167 * 119.00846 * 0.02562 * 16 11 10 18 18 F 1.35107 * 119.58607 * 179.97438 * 17 16 11 19 19 C 1.35431 * 120.83044 * 359.93567 * 17 16 11 20 20 H 0.96997 * 120.00139 * 0.02562 * 1 2 3 21 21 H 1.07994 * 119.98555 * 359.97438 * 10 9 7 22 22 H 1.07992 * 124.59462 * 180.21867 * 13 12 11 23 23 H 0.96699 * 114.00192 * 269.71581 * 15 14 13 24 24 H 1.07998 * 119.82025 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.0971 1.6964 -1.2125 5 1 1.2783 2.7464 -0.0006 6 1 3.0971 1.6965 1.2125 7 6 2.0083 -1.2106 0.0005 8 1 3.0535 -1.2309 -0.2710 9 6 1.3491 -2.4049 0.3555 10 6 0.2229 -2.3677 1.1941 11 6 -0.4241 -3.5461 1.5412 12 16 -1.8366 -3.8155 2.5568 13 6 -1.7553 -5.5487 2.2954 14 6 -0.7294 -5.8602 1.5080 15 8 -0.4502 -7.1454 1.1574 16 6 0.0447 -4.7771 1.0563 17 6 1.1865 -4.7949 0.2096 18 9 1.6480 -5.9734 -0.2634 19 6 1.8171 -3.6454 -0.1295 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1398 -1.4221 1.5691 22 1 -2.4436 -6.2655 2.7182 23 1 0.1540 -7.5960 1.7631 24 1 2.6830 -3.6778 -0.7742 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306955765.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:15 Heat of formation + Delta-G solvation = -60.398063 kcal Electronic energy + Delta-G solvation = -14130.262431 eV Core-core repulsion = 11435.067220 eV Total energy + Delta-G solvation = -2695.195210 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.91651 -38.67815 -36.88866 -34.28001 -32.40212 -29.10091 -28.89253 -25.60485 -22.40654 -21.53832 -20.07244 -18.10667 -17.18782 -16.35238 -15.53108 -15.22947 -15.02635 -14.67672 -14.35301 -13.88423 -13.45033 -12.48798 -12.23233 -12.17465 -11.81833 -11.44629 -11.32509 -11.01553 -10.70731 -10.55485 -9.99717 -9.92712 -9.72079 -9.25597 -8.38148 -7.63096 -7.16371 -6.71122 -4.71089 1.65182 2.46591 2.52302 2.78643 2.88561 2.89837 2.92015 3.20945 3.65611 4.20471 5.02013 5.18205 5.43254 5.60578 6.07191 6.41833 6.55068 6.64961 6.72232 6.86077 7.03307 7.24908 7.43436 7.63792 7.75018 8.14631 8.17006 8.40821 8.45940 9.76180 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.008456 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.093747 B = 3310.627346 C = 4062.560823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.425 4.425 8 H 0.091 0.909 9 C 0.143 3.857 10 C -0.164 4.164 11 C -0.051 4.051 12 S 0.039 5.961 13 C -0.306 4.306 14 C 0.157 3.843 15 O -0.490 6.490 16 C -0.270 4.270 17 C 0.166 3.834 18 F -0.154 7.154 19 C -0.236 4.236 20 H 0.291 0.709 21 H 0.130 0.870 22 H 0.152 0.848 23 H 0.380 0.620 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -1.815 3.201 3.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.453 4.453 8 H 0.109 0.891 9 C 0.136 3.864 10 C -0.191 4.191 11 C -0.166 4.166 12 S 0.298 5.702 13 C -0.439 4.439 14 C 0.101 3.899 15 O -0.299 6.299 16 C -0.276 4.276 17 C 0.145 3.855 18 F -0.133 7.133 19 C -0.256 4.256 20 H 0.102 0.898 21 H 0.148 0.852 22 H 0.170 0.830 23 H 0.234 0.766 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.004 -0.785 3.524 3.748 hybrid contribution 1.481 -0.594 -0.583 1.699 sum 0.478 -1.379 2.942 3.284 Atomic orbital electron populations 1.69850 1.07827 1.30597 1.30407 1.26098 0.94949 1.02123 0.92065 0.86148 0.80105 0.79017 0.80444 1.18529 1.19870 1.18308 1.19674 0.98176 0.90739 1.36745 0.89129 1.17230 0.90284 0.91315 0.87582 1.20633 1.00254 0.94747 1.03421 1.21914 0.98040 0.96189 1.00425 1.83614 1.31329 1.00620 1.54683 1.24610 1.07653 0.99103 1.12529 1.17025 0.94170 0.83420 0.95252 1.84825 1.68716 1.22715 1.53686 1.17697 1.03169 0.93128 1.13561 1.17077 0.93105 0.80294 0.95014 1.91380 1.88113 1.46904 1.86901 1.20661 1.05062 0.91778 1.08134 0.89789 0.85234 0.83048 0.76562 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.95 10.96 55.54 0.61 -17.34 14 2 C 0.07 1.57 5.14 -17.35 -0.09 1.48 14 3 Si 0.92 16.59 29.59 -169.99 -5.03 11.56 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 14 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 7 C -0.43 -10.09 9.02 -37.97 -0.34 -10.44 14 8 H 0.09 2.00 7.90 -52.48 -0.41 1.58 14 9 C 0.14 3.54 5.56 -106.91 -0.59 2.95 14 10 C -0.16 -4.08 8.71 -38.52 -0.34 -4.41 14 11 C -0.05 -1.21 6.46 -38.56 -0.25 -1.46 14 12 S 0.04 0.79 23.29 -107.50 -2.50 -1.71 14 13 C -0.31 -6.03 11.06 28.92 0.32 -5.71 14 14 C 0.16 3.37 6.71 -40.51 -0.27 3.10 14 15 O -0.49 -9.39 12.84 -20.09 -0.26 -9.65 14 16 C -0.27 -6.42 5.90 -106.71 -0.63 -7.05 14 17 C 0.17 3.95 7.30 -39.08 -0.29 3.66 14 18 F -0.15 -3.46 16.49 2.25 0.04 -3.42 14 19 C -0.24 -5.59 9.64 -39.47 -0.38 -5.97 14 20 H 0.29 6.15 8.30 -40.82 -0.34 5.81 14 21 H 0.13 3.27 6.18 -52.49 -0.32 2.94 14 22 H 0.15 2.56 8.06 -52.49 -0.42 2.14 14 23 H 0.38 5.36 9.07 45.56 0.41 5.77 14 24 H 0.12 2.51 8.06 -52.49 -0.42 2.09 14 LS Contribution 237.53 15.07 3.58 3.58 Total: -1.00 -26.69 237.53 -6.73 -33.42 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -0.31 Total: 7.42 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.86 Total: -23.85 kcal Atomic # 7 Polarization: -17.95 SS G_CDS: 0.61 Total: -17.34 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.26 Total: -9.65 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.04 Total: -3.42 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.69 -6.73 -33.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306955765.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.981 kcal (2) G-P(sol) polarization free energy of solvation -26.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds