Wall clock time and date at job start Mon Mar 30 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30938 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48504 * 109.46851 * 239.99770 * 3 2 1 5 5 H 1.48496 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47221 * 119.99916 * 3 2 1 7 7 C 1.39784 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00070 * 163.12113 * 7 2 1 9 9 C 1.40964 * 120.00230 * 343.12037 * 7 2 1 10 10 C 1.40457 * 120.18796 * 334.39598 * 9 7 2 11 11 C 1.38845 * 120.02175 * 179.97438 * 10 9 7 12 12 S 1.76047 * 130.38687 * 180.02562 * 11 10 9 13 13 C 1.75466 * 91.60508 * 179.81616 * 12 11 10 14 14 C 1.33028 * 110.80722 * 0.33144 * 13 12 11 15 15 O 1.36111 * 122.12332 * 179.86349 * 14 13 12 16 16 C 1.40365 * 120.15937 * 0.02562 * 11 10 9 17 17 C 1.42167 * 119.00846 * 0.02562 * 16 11 10 18 18 F 1.35107 * 119.58607 * 179.97438 * 17 16 11 19 19 C 1.35431 * 120.83044 * 359.93567 * 17 16 11 20 20 H 0.96997 * 120.00139 * 0.02562 * 1 2 3 21 21 H 1.07994 * 119.98555 * 359.97438 * 10 9 7 22 22 H 1.07992 * 124.59462 * 180.21867 * 13 12 11 23 23 H 0.96699 * 114.00192 * 269.71581 * 15 14 13 24 24 H 1.07998 * 119.82025 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.0971 1.6964 -1.2125 5 1 1.2783 2.7464 -0.0006 6 1 3.0971 1.6965 1.2125 7 6 2.0083 -1.2106 0.0005 8 1 3.0535 -1.2309 -0.2710 9 6 1.3491 -2.4049 0.3555 10 6 0.2229 -2.3677 1.1941 11 6 -0.4241 -3.5461 1.5412 12 16 -1.8366 -3.8155 2.5568 13 6 -1.7553 -5.5487 2.2954 14 6 -0.7294 -5.8602 1.5080 15 8 -0.4502 -7.1454 1.1574 16 6 0.0447 -4.7771 1.0563 17 6 1.1865 -4.7949 0.2096 18 9 1.6480 -5.9734 -0.2634 19 6 1.8171 -3.6454 -0.1295 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1398 -1.4221 1.5691 22 1 -2.4436 -6.2655 2.7182 23 1 0.1540 -7.5960 1.7631 24 1 2.6830 -3.6778 -0.7742 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306955765.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:15 Heat of formation + Delta-G solvation = -76.205300 kcal Electronic energy + Delta-G solvation = -14130.947884 eV Core-core repulsion = 11435.067220 eV Total energy + Delta-G solvation = -2695.880664 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.71944 -40.35479 -38.54767 -35.97197 -34.09981 -30.90906 -30.62167 -27.35395 -24.13568 -23.33489 -21.73345 -19.87500 -18.85513 -18.00089 -17.21291 -16.98847 -16.69428 -16.46604 -16.04599 -15.52024 -15.05040 -14.25045 -13.92083 -13.83659 -13.49690 -13.04680 -12.85873 -12.72166 -12.42715 -12.05875 -11.66931 -11.59109 -11.40263 -10.95288 -10.14062 -9.39787 -8.85336 -8.42071 -6.51072 -0.04819 0.63516 0.82429 1.18771 1.28731 1.41571 1.54434 1.62080 2.15138 2.48621 3.33992 3.53482 3.62186 3.94751 4.41220 4.62278 4.77895 4.98042 5.00846 5.15845 5.25096 5.49414 5.64455 5.82463 5.95310 6.35357 6.62760 6.65962 6.79242 8.10530 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.008456 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.093747 B = 3310.627346 C = 4062.560823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.451 4.451 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.184 4.184 11 C -0.076 4.076 12 S 0.075 5.925 13 C -0.287 4.287 14 C 0.138 3.862 15 O -0.493 6.493 16 C -0.286 4.286 17 C 0.155 3.845 18 F -0.149 7.149 19 C -0.246 4.246 20 H 0.299 0.701 21 H 0.119 0.881 22 H 0.187 0.813 23 H 0.402 0.598 24 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -1.811 3.733 4.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.478 4.478 8 H 0.117 0.883 9 C 0.111 3.889 10 C -0.211 4.211 11 C -0.191 4.191 12 S 0.334 5.666 13 C -0.420 4.420 14 C 0.083 3.917 15 O -0.305 6.305 16 C -0.292 4.292 17 C 0.134 3.866 18 F -0.128 7.128 19 C -0.266 4.266 20 H 0.110 0.890 21 H 0.136 0.864 22 H 0.204 0.796 23 H 0.259 0.741 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.269 -0.808 4.064 4.334 hybrid contribution 1.477 -0.719 -0.705 1.788 sum 0.208 -1.528 3.359 3.696 Atomic orbital electron populations 1.69893 1.09365 1.31992 1.30713 1.26985 0.95570 1.05177 0.90861 0.85053 0.78703 0.74420 0.80549 1.17835 1.19062 1.17971 1.20005 0.98782 0.91395 1.37664 0.88268 1.17549 0.90899 0.92230 0.88227 1.20586 1.01243 0.94768 1.04536 1.22248 0.99537 0.96043 1.01250 1.83458 1.29032 1.01020 1.53113 1.25047 1.06921 0.99327 1.10719 1.16992 0.94734 0.83820 0.96199 1.84777 1.69417 1.21591 1.54739 1.18088 1.03458 0.94127 1.13533 1.17207 0.93506 0.80506 0.95419 1.91377 1.88075 1.46471 1.86858 1.20830 1.05605 0.91711 1.08470 0.88978 0.86368 0.79590 0.74101 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.87 10.96 21.80 0.24 -37.63 14 2 C 0.03 1.50 5.14 85.20 0.44 1.94 14 3 Si 0.99 33.43 29.59 68.60 2.03 35.46 14 4 H -0.25 -8.25 7.11 99.48 0.71 -7.54 14 5 H -0.27 -8.55 7.11 99.48 0.71 -7.84 14 6 H -0.26 -8.42 7.11 99.48 0.71 -7.71 14 7 C -0.45 -21.74 9.02 23.31 0.21 -21.53 14 8 H 0.10 4.42 7.90 -2.91 -0.02 4.40 14 9 C 0.12 5.99 5.56 -21.35 -0.12 5.87 14 10 C -0.18 -9.42 8.71 22.96 0.20 -9.22 14 11 C -0.08 -3.62 6.46 22.93 0.15 -3.47 14 12 S 0.07 2.92 23.29 -56.49 -1.32 1.60 14 13 C -0.29 -10.49 11.06 66.66 0.74 -9.75 14 14 C 0.14 5.68 6.71 21.68 0.15 5.82 14 15 O -0.49 -17.78 12.84 -94.81 -1.22 -18.99 14 16 C -0.29 -13.52 5.90 -21.22 -0.13 -13.64 14 17 C 0.15 7.39 7.30 22.60 0.16 7.56 14 18 F -0.15 -6.63 16.49 44.97 0.74 -5.89 14 19 C -0.25 -11.87 9.64 22.34 0.22 -11.66 14 20 H 0.30 12.70 8.30 -92.71 -0.77 11.93 14 21 H 0.12 6.17 6.18 -2.91 -0.02 6.15 14 22 H 0.19 5.45 8.06 -2.91 -0.02 5.42 14 23 H 0.40 10.35 9.07 -74.06 -0.67 9.68 14 24 H 0.13 5.63 8.06 -2.91 -0.02 5.60 14 Total: -1.00 -56.52 237.53 3.09 -53.44 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.59 Total: 20.09 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 2.02 Total: -48.08 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.24 Total: -37.63 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -1.22 Total: -18.99 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.74 Total: -5.89 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.46 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.32 Total: 1.60 kcal Total: -56.52 3.09 -53.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306955765.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.767 kcal (2) G-P(sol) polarization free energy of solvation -56.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds