Wall clock time and date at job start Mon Mar 30 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86805 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47037 * 300.00178 * 3 2 1 6 6 H 1.48505 * 109.47059 * 60.00417 * 3 2 1 7 7 C 1.39848 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99855 * 194.89517 * 7 2 1 9 9 C 1.40532 * 120.00267 * 14.89701 * 7 2 1 10 10 C 1.40420 * 120.41179 * 26.39859 * 9 7 2 11 11 C 1.37490 * 120.12292 * 179.74375 * 10 9 7 12 12 C 1.38312 * 121.11239 * 0.27718 * 11 10 9 13 13 C 1.39379 * 121.47523 * 359.97438 * 12 11 10 14 14 S 1.76057 * 130.52454 * 179.97438 * 13 12 11 15 15 C 1.75500 * 91.59485 * 179.97438 * 14 13 12 16 16 F 1.35094 * 124.68915 * 180.02562 * 15 14 13 17 17 C 1.33648 * 110.61652 * 0.02562 * 15 14 13 18 18 O 1.36174 * 122.18946 * 180.02562 * 17 15 14 19 19 C 1.39925 * 120.04576 * 0.02562 * 13 12 11 20 20 H 0.97001 * 120.00481 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.93754 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.44851 * 180.25068 * 11 10 9 23 23 H 1.07993 * 119.26308 * 180.02562 * 12 11 10 24 24 H 0.96695 * 114.00229 * 269.97654 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3465 -0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8844 2.3965 1.2126 7 6 2.0085 -1.2111 -0.0005 8 1 3.0613 -1.2269 0.2399 9 6 1.3413 -2.4076 -0.3139 10 6 0.2001 -2.3919 -1.1320 11 6 -0.4449 -3.5666 -1.4391 12 6 0.0068 -4.7790 -0.9501 13 6 1.1305 -4.8595 -0.1294 14 16 1.9044 -6.2536 0.6171 15 6 3.1277 -5.2382 1.3603 16 9 4.1309 -5.6913 2.1436 17 6 2.9297 -3.9548 1.0442 18 8 3.7450 -2.9622 1.4962 19 6 1.8289 -3.6979 0.2181 20 1 -0.4851 0.8400 0.0004 21 1 -0.1690 -1.4558 -1.5243 22 1 -1.3193 -3.5423 -2.0726 23 1 -0.5225 -5.6835 -1.2106 24 1 3.4677 -2.5788 2.3395 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306958086.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:42 Heat of formation + Delta-G solvation = -53.515788 kcal Electronic energy + Delta-G solvation = -14240.153764 eV Core-core repulsion = 11545.256991 eV Total energy + Delta-G solvation = -2694.896773 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.02924 -38.61635 -36.43958 -34.28911 -32.45792 -29.94775 -27.72762 -25.36636 -22.53635 -21.23852 -20.00863 -18.19858 -17.04195 -16.68919 -15.59187 -15.45554 -15.13322 -14.82996 -14.08712 -13.43389 -13.23684 -12.86406 -12.37524 -12.06499 -11.72842 -11.45050 -11.25744 -11.08976 -10.72222 -10.26637 -9.86068 -9.74848 -9.46968 -9.33041 -8.30274 -7.40477 -7.18202 -6.88753 -4.63707 1.55997 2.06885 2.51478 2.68664 2.89026 2.94534 2.97086 3.20246 3.65405 4.25653 5.07245 5.27150 5.32058 6.03922 6.22037 6.48112 6.67102 6.69738 6.75881 6.95261 7.07439 7.37029 7.66376 7.72644 7.85768 8.24786 8.30940 8.44315 8.55554 9.70836 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028559 B = 0.009921 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.192406 B = 2821.499278 C = 3724.370589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.068 3.932 3 Si 0.919 3.081 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.104 0.896 9 C 0.159 3.841 10 C -0.184 4.184 11 C -0.059 4.059 12 C -0.227 4.227 13 C -0.056 4.056 14 S 0.039 5.961 15 C -0.133 4.133 16 F -0.119 7.119 17 C 0.154 3.846 18 O -0.476 6.476 19 C -0.216 4.216 20 H 0.289 0.711 21 H 0.127 0.873 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 -0.928 0.652 1.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.154 4.154 3 Si 0.742 3.258 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.439 4.439 8 H 0.121 0.879 9 C 0.153 3.847 10 C -0.205 4.205 11 C -0.080 4.080 12 C -0.253 4.253 13 C -0.171 4.171 14 S 0.296 5.704 15 C -0.266 4.266 16 F -0.099 7.099 17 C 0.096 3.904 18 O -0.286 6.286 19 C -0.222 4.222 20 H 0.100 0.900 21 H 0.144 0.856 22 H 0.118 0.882 23 H 0.114 0.886 24 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.347 -2.426 0.279 2.466 hybrid contribution 0.478 2.108 0.677 2.265 sum 0.825 -0.317 0.956 1.302 Atomic orbital electron populations 1.69866 1.07897 1.30383 1.30413 1.26209 0.94944 1.02291 0.92002 0.86046 0.81242 0.79488 0.79000 1.17691 1.19245 1.19490 1.20037 0.98493 0.90250 1.35100 0.87856 1.18394 0.90252 0.89014 0.87038 1.21142 0.99345 0.97240 1.02783 1.20531 0.97600 0.92371 0.97482 1.19486 0.99955 0.97207 1.08664 1.21772 0.99865 0.93478 1.02026 1.83621 1.24115 1.09639 1.53073 1.21258 0.99050 0.94944 1.11301 1.91334 1.57315 1.88789 1.72443 1.17219 0.90952 0.85575 0.96648 1.84800 1.50175 1.51224 1.42393 1.18782 0.99843 0.94768 1.08770 0.89959 0.85579 0.88231 0.88590 0.76027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.39 10.91 55.54 0.61 -16.79 14 2 C 0.07 1.51 5.18 -17.34 -0.09 1.42 14 3 Si 0.92 16.72 29.58 -169.99 -5.03 11.69 14 4 H -0.25 -4.68 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 14 6 H -0.27 -4.82 7.11 56.52 0.40 -4.42 14 7 C -0.41 -9.93 8.51 -38.12 -0.32 -10.25 14 8 H 0.10 2.47 6.29 -52.48 -0.33 2.14 14 9 C 0.16 3.98 5.75 -104.28 -0.60 3.38 14 10 C -0.18 -4.39 8.64 -39.03 -0.34 -4.72 14 11 C -0.06 -1.27 9.95 -39.83 -0.40 -1.67 14 12 C -0.23 -4.93 10.01 -39.13 -0.39 -5.33 14 13 C -0.06 -1.30 6.48 -38.53 -0.25 -1.55 14 14 S 0.04 0.79 23.29 -107.50 -2.50 -1.72 14 15 C -0.13 -2.95 8.27 29.12 0.24 -2.71 14 16 F -0.12 -2.55 17.32 2.25 0.04 -2.51 14 17 C 0.15 3.56 6.69 -40.53 -0.27 3.29 14 18 O -0.48 -10.14 11.41 -20.29 -0.23 -10.37 14 19 C -0.22 -5.29 6.03 -104.67 -0.63 -5.92 14 20 H 0.29 5.88 8.30 -40.82 -0.34 5.54 14 21 H 0.13 3.02 6.17 -52.49 -0.32 2.70 14 22 H 0.10 1.85 8.06 -52.49 -0.42 1.43 14 23 H 0.10 1.85 8.06 -52.49 -0.42 1.43 14 24 H 0.38 6.53 9.07 45.56 0.41 6.94 14 LS Contribution 235.27 15.07 3.55 3.55 Total: -1.00 -26.28 235.27 -6.84 -33.12 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -0.22 Total: 7.09 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -3.05 Total: -24.06 kcal Atomic # 7 Polarization: -17.39 SS G_CDS: 0.61 Total: -16.79 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.23 Total: -10.37 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.72 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -26.28 -6.84 -33.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306958086.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.391 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds