Wall clock time and date at job start Mon Mar 30 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86804 * 119.99737 * 2 1 4 4 H 1.48499 * 109.46891 * 239.99676 * 3 2 1 5 5 H 1.48494 * 109.47514 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46891 * 120.00063 * 3 2 1 7 7 C 1.39864 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00070 * 163.50964 * 7 2 1 9 9 C 1.40512 * 119.99474 * 343.51148 * 7 2 1 10 10 C 1.40414 * 120.42224 * 333.59282 * 9 7 2 11 11 C 1.37462 * 120.12121 * 180.02562 * 10 9 7 12 12 C 1.38370 * 121.12593 * 0.02562 * 11 10 9 13 13 C 1.39275 * 121.49096 * 359.95564 * 12 11 10 14 14 S 1.76064 * 130.51852 * 180.02562 * 13 12 11 15 15 C 1.75502 * 91.57088 * 180.02562 * 14 13 12 16 16 O 1.35604 * 124.70918 * 180.02562 * 15 14 13 17 17 C 1.33878 * 110.58137 * 359.74322 * 15 14 13 18 18 F 1.35100 * 122.19101 * 180.28899 * 17 15 14 19 19 C 1.39731 * 115.62012 * 0.46424 * 17 15 14 20 20 H 0.97004 * 120.00277 * 359.97438 * 1 2 3 21 21 H 1.08006 * 119.94146 * 0.02562 * 10 9 7 22 22 H 1.08002 * 119.44110 * 179.97438 * 11 10 9 23 23 H 1.07998 * 119.25356 * 179.97438 * 12 11 10 24 24 H 0.96700 * 114.00471 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6965 1.2126 7 6 2.0086 -1.2112 0.0005 8 1 3.0552 -1.2305 -0.2649 9 6 1.3493 -2.4029 0.3465 10 6 0.2282 -2.3758 1.1915 11 6 -0.4117 -3.5454 1.5263 12 6 0.0292 -4.7652 1.0443 13 6 1.1347 -4.8582 0.2023 14 16 1.8915 -6.2635 -0.5409 15 6 3.1000 -5.2594 -1.3228 16 8 4.0897 -5.7251 -2.1243 17 6 2.9054 -3.9692 -1.0231 18 9 3.7007 -2.9900 -1.5068 19 6 1.8282 -3.7019 -0.1741 20 1 -0.4851 0.8401 0.0004 21 1 -0.1320 -1.4342 1.5791 22 1 -1.2727 -3.5118 2.1774 23 1 -0.4961 -5.6654 1.3271 24 1 4.0837 -6.6852 -2.2394 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306958354.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:37 Heat of formation + Delta-G solvation = -69.985932 kcal Electronic energy + Delta-G solvation = -14237.922811 eV Core-core repulsion = 11542.311840 eV Total energy + Delta-G solvation = -2695.610972 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.60336 -39.77204 -38.83913 -36.05763 -34.61739 -31.73338 -29.40220 -27.11717 -24.30394 -23.08365 -21.47064 -20.34443 -19.19599 -17.82296 -17.48508 -17.11555 -16.78329 -16.64121 -15.43571 -15.18105 -14.78045 -14.74046 -14.06171 -13.78035 -13.58995 -13.28109 -13.06568 -12.80360 -12.36938 -12.11292 -11.63776 -11.40439 -11.33599 -11.01630 -10.02120 -8.99652 -8.85075 -8.50610 -6.41115 -0.04949 0.37629 0.80210 0.82569 1.34140 1.40153 1.46598 1.54143 2.13004 2.53917 2.84649 3.47529 3.81605 4.34612 4.42903 4.64225 4.85823 4.99628 5.01302 5.27712 5.34466 5.74469 5.85073 5.99099 6.07825 6.43870 6.48507 6.64682 6.77681 8.08332 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.009986 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.216619 B = 2803.332301 C = 3695.658354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.254 1.254 6 H -0.256 1.256 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.123 3.877 10 C -0.203 4.203 11 C -0.061 4.061 12 C -0.221 4.221 13 C -0.092 4.092 14 S 0.113 5.887 15 C -0.067 4.067 16 O -0.444 6.444 17 C 0.061 3.939 18 F -0.145 7.145 19 C -0.235 4.235 20 H 0.300 0.700 21 H 0.116 0.884 22 H 0.133 0.867 23 H 0.129 0.871 24 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -5.848 0.437 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.178 1.178 6 H -0.180 1.180 7 C -0.486 4.486 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.081 4.081 12 C -0.247 4.247 13 C -0.206 4.206 14 S 0.369 5.631 15 C -0.227 4.227 16 O -0.252 6.252 17 C 0.030 3.970 18 F -0.124 7.124 19 C -0.241 4.241 20 H 0.111 0.889 21 H 0.134 0.866 22 H 0.151 0.849 23 H 0.147 0.853 24 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.778 -6.597 0.283 6.649 hybrid contribution 0.698 1.800 -0.347 1.961 sum 1.476 -4.798 -0.063 5.020 Atomic orbital electron populations 1.69852 1.08851 1.31868 1.30917 1.26860 0.95682 1.04619 0.90970 0.85190 0.79015 0.75067 0.80255 1.18911 1.17767 1.17960 1.19900 0.98270 0.92302 1.38152 0.90415 1.18735 0.91534 0.89536 0.88384 1.21061 1.00289 0.98030 1.03121 1.20877 0.98088 0.91670 0.97510 1.19870 0.99745 0.98169 1.06920 1.21985 1.00987 0.94194 1.03468 1.83139 1.24464 1.05968 1.49544 1.22190 0.99459 0.94645 1.06393 1.84705 1.46145 1.30109 1.64215 1.16120 0.94477 0.83412 1.02963 1.91327 1.72422 1.61844 1.86784 1.18820 1.01357 0.95984 1.07936 0.88892 0.86639 0.84917 0.85304 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.00 11.00 21.82 0.24 -38.76 14 2 C 0.04 1.87 5.15 85.22 0.44 2.30 14 3 Si 0.99 37.20 29.59 68.60 2.03 39.23 14 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 14 5 H -0.25 -8.67 7.11 99.48 0.71 -7.97 14 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 7 C -0.46 -25.03 8.56 23.22 0.20 -24.83 14 8 H 0.08 4.31 6.47 -2.91 -0.02 4.29 14 9 C 0.12 6.73 5.74 -19.63 -0.11 6.62 14 10 C -0.20 -10.23 8.64 22.62 0.20 -10.04 14 11 C -0.06 -2.62 9.95 22.12 0.22 -2.40 14 12 C -0.22 -9.21 10.01 22.55 0.23 -8.99 14 13 C -0.09 -4.10 6.47 22.94 0.15 -3.95 14 14 S 0.11 3.92 23.24 -56.49 -1.31 2.61 14 15 C -0.07 -2.71 7.59 66.83 0.51 -2.20 14 16 O -0.44 -14.95 13.63 -89.15 -1.21 -16.17 14 17 C 0.06 3.04 7.30 21.64 0.16 3.20 14 18 F -0.14 -7.63 15.37 44.97 0.69 -6.94 14 19 C -0.23 -12.17 6.02 -19.93 -0.12 -12.29 14 20 H 0.30 13.04 8.30 -92.71 -0.77 12.27 14 21 H 0.12 5.88 6.23 -2.91 -0.02 5.87 14 22 H 0.13 4.70 8.06 -2.91 -0.02 4.68 14 23 H 0.13 4.43 8.06 -2.91 -0.02 4.40 14 24 H 0.42 8.39 9.02 -74.06 -0.67 7.72 14 Total: -1.00 -62.35 235.72 2.89 -59.46 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.60 Total: 13.16 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 1.86 Total: -52.58 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.24 Total: -38.76 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.21 Total: -16.17 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.69 Total: -6.94 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.31 Total: 2.61 kcal Total: -62.35 2.89 -59.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306958354.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.530 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds