Wall clock time and date at job start Mon Mar 30 2020 05:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30997 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46994 * 299.99692 * 3 2 1 6 6 H 1.48502 * 109.47397 * 59.99822 * 3 2 1 7 7 C 1.39792 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00609 * 201.04226 * 7 2 1 9 9 C 1.40731 * 119.99536 * 21.03349 * 7 2 1 10 10 C 1.42222 * 120.11126 * 38.80674 * 9 7 2 11 11 S 1.75911 * 130.42815 * 0.06501 * 10 9 7 12 12 C 1.75311 * 92.15684 * 179.97438 * 11 10 9 13 13 C 1.31921 * 111.27320 * 359.76088 * 12 11 10 14 14 C 1.39164 * 119.77037 * 180.02562 * 10 9 7 15 15 C 1.41877 * 119.08217 * 359.97438 * 14 10 9 16 16 F 1.35101 * 119.51575 * 179.97438 * 15 14 10 17 17 C 1.37721 * 120.96710 * 359.97438 * 15 14 10 18 18 C 1.38528 * 120.65194 * 0.02562 * 17 15 14 19 19 O 1.35649 * 120.12702 * 179.97438 * 18 17 15 20 20 H 0.97005 * 119.99977 * 0.02562 * 1 2 3 21 21 H 1.07996 * 124.36096 * 180.02562 * 12 11 10 22 22 H 1.07998 * 122.55754 * 180.26738 * 13 12 11 23 23 H 1.08000 * 119.66997 * 179.97438 * 17 15 14 24 24 H 0.96700 * 114.00187 * 84.96279 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 3.7040 1.3464 0.0006 5 1 1.8853 2.3964 -1.2126 6 1 1.8853 2.3965 1.2125 7 6 2.0090 -1.2106 0.0005 8 1 3.0349 -1.2417 0.3363 9 6 1.3756 -2.3889 -0.4364 10 6 0.4915 -2.3530 -1.5499 11 16 -0.0025 -1.0087 -2.5713 12 6 -1.0319 -2.0408 -3.5453 13 6 -0.9907 -3.2908 -3.1257 14 6 -0.1314 -3.5223 -1.9756 15 6 0.1308 -4.7339 -1.2855 16 9 -0.4697 -5.8742 -1.6910 17 6 0.9884 -4.7647 -0.2083 18 6 1.6162 -3.6094 0.2277 19 8 2.4585 -3.6518 1.2902 20 1 -0.4850 0.8401 -0.0004 21 1 -1.6203 -1.6982 -4.3836 22 1 -1.5539 -4.0815 -3.5989 23 1 1.1725 -5.6986 0.3019 24 1 3.3647 -3.9026 1.0640 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306959470.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:56 Heat of formation + Delta-G solvation = -57.585649 kcal Electronic energy + Delta-G solvation = -14400.268112 eV Core-core repulsion = 11705.194857 eV Total energy + Delta-G solvation = -2695.073255 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.65833 -38.36054 -36.17705 -34.27560 -32.70205 -29.74433 -27.59080 -25.18827 -22.61945 -21.36381 -19.66948 -18.03345 -17.37279 -15.96138 -15.69928 -15.25625 -14.51862 -14.36252 -14.16013 -13.57621 -13.23605 -12.74645 -12.53768 -12.08336 -11.71341 -11.43596 -11.18238 -10.86097 -10.75214 -10.31776 -9.91288 -9.73120 -9.41809 -8.99448 -8.27066 -7.37656 -7.11185 -6.33650 -4.58289 1.73484 2.39229 2.72673 2.91741 3.01081 3.05678 3.27026 3.29628 3.82094 4.31550 4.95632 5.30632 5.48013 5.76376 5.99339 6.04622 6.44123 6.68013 6.80919 6.90248 7.00684 7.15744 7.27235 7.56565 7.83924 8.11765 8.33670 8.56395 8.90699 9.95258 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.012630 C = 0.008826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.871136 B = 2216.328926 C = 3171.797410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.125 3.875 10 C -0.140 4.140 11 S 0.128 5.872 12 C -0.235 4.235 13 C -0.125 4.125 14 C -0.085 4.085 15 C 0.006 3.994 16 F -0.164 7.164 17 C -0.133 4.133 18 C 0.012 3.988 19 O -0.480 6.480 20 H 0.289 0.711 21 H 0.149 0.851 22 H 0.125 0.875 23 H 0.114 0.886 24 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -0.245 -3.749 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.153 4.153 3 Si 0.726 3.274 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.257 4.257 11 S 0.394 5.606 12 C -0.369 4.369 13 C -0.157 4.157 14 C -0.093 4.093 15 C -0.016 4.016 16 F -0.143 7.143 17 C -0.154 4.154 18 C -0.037 4.037 19 O -0.287 6.287 20 H 0.100 0.900 21 H 0.167 0.833 22 H 0.142 0.858 23 H 0.132 0.868 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.885 1.634 -3.539 3.997 hybrid contribution 0.102 -1.179 -0.213 1.202 sum 0.987 0.456 -3.751 3.906 Atomic orbital electron populations 1.69872 1.07584 1.30378 1.30884 1.25894 0.94727 1.01425 0.93204 0.86288 0.81253 0.80793 0.79029 1.18085 1.19102 1.19686 1.19265 0.99868 0.90989 1.37429 0.89203 1.17134 0.89937 0.93170 0.87928 1.22203 1.07606 0.94073 1.01866 1.83790 1.44290 1.10343 1.22160 1.25303 1.07399 0.98583 1.05620 1.20678 1.01179 0.96587 0.97273 1.18942 1.00280 0.92769 0.97330 1.16735 1.04182 0.80259 1.00452 1.91300 1.83168 1.49132 1.90694 1.20600 0.99972 0.98414 0.96440 1.17921 1.01425 0.91839 0.92561 1.84826 1.21591 1.91574 1.30692 0.89963 0.83343 0.85756 0.86752 0.79008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.91 10.69 55.54 0.59 -18.32 14 2 C 0.07 1.63 4.25 -17.33 -0.07 1.56 14 3 Si 0.90 17.93 29.61 -169.99 -5.03 12.90 14 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 14 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 7 C -0.45 -11.28 8.42 -38.06 -0.32 -11.60 14 8 H 0.09 2.18 7.90 -52.49 -0.41 1.76 14 9 C 0.12 3.21 5.38 -106.37 -0.57 2.64 14 10 C -0.14 -3.51 5.73 -37.71 -0.22 -3.73 14 11 S 0.13 2.84 19.85 -107.50 -2.13 0.70 14 12 C -0.23 -4.58 11.03 28.82 0.32 -4.26 14 13 C -0.12 -2.61 10.33 -38.63 -0.40 -3.01 14 14 C -0.08 -2.03 6.04 -105.30 -0.64 -2.67 14 15 C 0.01 0.14 7.37 -38.38 -0.28 -0.14 14 16 F -0.16 -3.64 17.20 2.25 0.04 -3.60 14 17 C -0.13 -3.03 9.88 -39.66 -0.39 -3.42 14 18 C 0.01 0.29 6.73 -38.42 -0.26 0.03 14 19 O -0.48 -10.41 12.92 -18.65 -0.24 -10.65 14 20 H 0.29 6.51 8.30 -40.82 -0.34 6.18 14 21 H 0.15 2.34 8.06 -52.49 -0.42 1.92 14 22 H 0.12 2.30 8.06 -52.49 -0.42 1.87 14 23 H 0.11 2.30 8.06 -52.49 -0.42 1.88 14 24 H 0.36 5.85 9.06 45.56 0.41 6.26 14 LS Contribution 236.18 15.07 3.56 3.56 Total: -1.00 -28.03 236.18 -6.45 -34.48 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -0.40 Total: 5.54 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -2.83 Total: -24.61 kcal Atomic # 7 Polarization: -18.91 SS G_CDS: 0.59 Total: -18.32 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.24 Total: -10.65 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.13 Total: 0.70 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.03 -6.45 -34.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306959470.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.101 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds