Wall clock time and date at job start Mon Mar 30 2020 05:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31174 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48507 * 109.46832 * 239.72112 * 3 2 1 5 5 H 1.48497 * 109.47289 * 359.72230 * 3 2 1 6 6 H 1.48502 * 109.47043 * 119.72640 * 3 2 1 7 7 C 1.39623 * 120.00064 * 179.72221 * 2 1 3 8 8 H 1.07998 * 119.99800 * 154.83133 * 7 2 1 9 9 C 1.40754 * 120.00027 * 334.82974 * 7 2 1 10 10 C 1.36900 * 123.33725 * 328.50355 * 9 7 2 11 11 F 1.35095 * 124.06030 * 0.02562 * 10 9 7 12 12 S 1.69979 * 111.87565 * 179.88171 * 10 9 7 13 13 C 1.75772 * 93.25624 * 0.32805 * 12 10 9 14 14 C 1.39234 * 110.27323 * 359.81644 * 13 12 10 15 15 C 1.40701 * 119.28614 * 180.02562 * 14 13 12 16 16 C 1.37463 * 120.41320 * 359.97438 * 15 14 13 17 17 C 1.38565 * 120.29908 * 359.97438 * 16 15 14 18 18 C 1.38168 * 120.12890 * 0.03259 * 17 16 15 19 19 O 1.35931 * 119.85638 * 179.97438 * 18 17 16 20 20 H 0.97006 * 119.99959 * 174.36097 * 1 2 3 21 21 H 1.07991 * 119.79257 * 179.97438 * 15 14 13 22 22 H 1.08006 * 119.84653 * 180.02562 * 16 15 14 23 23 H 1.08007 * 119.93697 * 180.02562 * 17 16 15 24 24 H 0.96705 * 113.99631 * 270.01514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 14 2.2457 1.6178 0.0000 4 1 3.1046 1.6935 -1.2092 5 1 1.2807 2.7465 -0.0068 6 1 3.0944 1.6994 1.2158 7 6 2.0099 -1.2091 0.0059 8 1 3.0129 -1.2554 -0.3917 9 6 1.4064 -2.3677 0.5299 10 6 0.4994 -2.3456 1.5551 11 9 0.0844 -1.2187 2.1740 12 16 -0.0448 -3.9059 1.9532 13 6 0.9580 -4.6759 0.7321 14 6 1.6913 -3.7185 0.0362 15 6 2.5611 -4.1300 -0.9905 16 6 2.6867 -5.4625 -1.3037 17 6 1.9577 -6.4154 -0.6104 18 6 1.0984 -6.0307 0.4009 19 8 0.3856 -6.9700 1.0771 20 1 -0.4850 -0.8360 -0.0825 21 1 3.1334 -3.3943 -1.5358 22 1 3.3573 -5.7682 -2.0932 23 1 2.0613 -7.4608 -0.8610 24 1 -0.4769 -7.1661 0.6861 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306960992.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:36 Heat of formation + Delta-G solvation = -79.079579 kcal Electronic energy + Delta-G solvation = -14273.476235 eV Core-core repulsion = 11577.470934 eV Total energy + Delta-G solvation = -2696.005302 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.08344 -40.70989 -38.25146 -36.44258 -34.12845 -30.81037 -29.68958 -27.62487 -24.23349 -23.29067 -22.00507 -19.93883 -19.11300 -18.21598 -17.13435 -17.09283 -16.42204 -16.10758 -15.82018 -15.56904 -15.26669 -14.36958 -14.09117 -13.94650 -13.75612 -12.85722 -12.82047 -12.67455 -12.04472 -11.90407 -11.65081 -11.53911 -11.26824 -10.86858 -10.17056 -9.36339 -9.24634 -8.66740 -6.54736 -0.09548 0.21574 0.72136 1.25633 1.37125 1.46767 1.71795 1.77093 2.29727 2.62404 3.02458 3.26276 3.76265 4.09673 4.22805 4.49721 4.63789 4.91035 4.98869 5.19740 5.31390 5.37957 5.53817 5.67150 5.89224 5.91679 6.36389 6.74884 6.78450 7.96090 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.009569 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.587132 B = 2925.321261 C = 3605.810529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C -0.006 4.006 3 Si 1.118 2.882 4 H -0.243 1.243 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.512 4.512 8 H 0.090 0.910 9 C 0.031 3.969 10 C -0.287 4.287 11 F -0.140 7.140 12 S 0.083 5.917 13 C -0.173 4.173 14 C -0.076 4.076 15 C -0.094 4.094 16 C -0.102 4.102 17 C -0.123 4.123 18 C 0.123 3.877 19 O -0.499 6.499 20 H 0.276 0.724 21 H 0.129 0.871 22 H 0.172 0.828 23 H 0.172 0.828 24 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -9.425 -4.347 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.224 4.224 3 Si 0.934 3.066 4 H -0.167 1.167 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.108 0.892 9 C 0.019 3.981 10 C -0.421 4.421 11 F -0.120 7.120 12 S 0.341 5.659 13 C -0.289 4.289 14 C -0.085 4.085 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.144 4.144 18 C 0.072 3.928 19 O -0.312 6.312 20 H 0.088 0.912 21 H 0.147 0.853 22 H 0.190 0.810 23 H 0.189 0.811 24 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.854 -8.159 -2.797 9.085 hybrid contribution 0.083 -0.489 -0.792 0.934 sum 2.937 -8.648 -3.589 9.813 Atomic orbital electron populations 1.70599 1.09063 1.32758 1.29580 1.28510 0.95602 1.07719 0.90519 0.83012 0.74765 0.69543 0.79282 1.16663 1.19904 1.19526 1.20235 1.03085 0.94015 1.36895 0.89202 1.18112 0.94310 0.93388 0.92241 1.20763 1.23595 0.86799 1.10906 1.91204 1.90140 1.48763 1.81864 1.81599 1.48777 0.95326 1.40163 1.23135 1.05124 0.97551 1.03070 1.19329 0.99379 0.91478 0.98316 1.21163 0.96947 0.97624 0.95618 1.21214 0.99930 0.90583 1.00557 1.21546 0.97009 1.01889 0.93922 1.17879 0.97247 0.83540 0.94154 1.84766 1.35019 1.56955 1.54412 0.91247 0.85279 0.81020 0.81091 0.73578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.41 11.98 21.79 0.26 -46.15 14 2 C -0.01 -0.34 4.64 85.13 0.40 0.05 14 3 Si 1.12 45.17 30.00 68.60 2.06 47.23 14 4 H -0.24 -8.49 7.11 99.48 0.71 -7.78 14 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 14 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 7 C -0.51 -27.99 8.94 23.22 0.21 -27.78 14 8 H 0.09 4.57 7.96 -2.91 -0.02 4.54 14 9 C 0.03 1.68 5.22 -20.79 -0.11 1.58 14 10 C -0.29 -16.29 6.78 67.51 0.46 -15.83 14 11 F -0.14 -8.53 14.72 44.97 0.66 -7.87 14 12 S 0.08 3.86 22.92 -56.49 -1.29 2.57 14 13 C -0.17 -7.47 6.39 22.98 0.15 -7.32 14 14 C -0.08 -3.56 6.02 -20.25 -0.12 -3.68 14 15 C -0.09 -3.48 9.86 22.69 0.22 -3.26 14 16 C -0.10 -2.78 10.01 22.16 0.22 -2.56 14 17 C -0.12 -3.29 9.96 22.33 0.22 -3.07 14 18 C 0.12 4.13 6.73 22.72 0.15 4.29 14 19 O -0.50 -14.31 13.47 -92.77 -1.25 -15.56 14 20 H 0.28 16.94 6.89 -92.70 -0.64 16.30 14 21 H 0.13 4.55 8.06 -2.92 -0.02 4.52 14 22 H 0.17 3.08 8.06 -2.91 -0.02 3.06 14 23 H 0.17 3.11 8.06 -2.91 -0.02 3.08 14 24 H 0.41 7.64 9.06 -74.05 -0.67 6.97 14 Total: -1.00 -69.88 237.04 2.95 -66.93 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.72 Total: 10.44 kcal Atomic # 6 Polarization: -59.38 SS G_CDS: 1.80 Total: -57.58 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.26 Total: -46.15 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.25 Total: -15.56 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 0.66 Total: -7.87 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.06 Total: 47.23 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.29 Total: 2.57 kcal Total: -69.88 2.95 -66.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306960992.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.154 kcal (2) G-P(sol) polarization free energy of solvation -69.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds