Wall clock time and date at job start Mon Mar 30 2020 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30997 * 1 3 3 Si 1.86804 * 119.99922 * 2 1 4 4 H 1.48505 * 109.46844 * 239.99673 * 3 2 1 5 5 H 1.48498 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46957 * 120.00093 * 3 2 1 7 7 C 1.39769 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00438 * 163.25490 * 7 2 1 9 9 C 1.40818 * 119.99809 * 343.26031 * 7 2 1 10 10 C 1.41237 * 120.25609 * 334.26180 * 9 7 2 11 11 C 1.35117 * 120.43221 * 179.75128 * 10 9 7 12 12 C 1.42254 * 121.02178 * 0.25482 * 11 10 9 13 13 C 1.40417 * 128.50079 * 179.97438 * 12 11 10 14 14 C 1.32923 * 115.79733 * 180.02562 * 13 12 11 15 15 F 1.35097 * 124.63468 * 180.02562 * 14 13 12 16 16 S 1.75477 * 110.73184 * 359.97438 * 14 13 12 17 17 C 1.40007 * 119.05385 * 0.02562 * 12 11 10 18 18 C 1.39460 * 120.14308 * 359.97438 * 17 12 11 19 19 O 1.35681 * 120.06889 * 180.02562 * 18 17 12 20 20 H 0.97004 * 119.99667 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.78160 * 0.02940 * 10 9 7 22 22 H 1.08000 * 119.49138 * 180.23468 * 11 10 9 23 23 H 1.08000 * 122.10346 * 0.02562 * 13 12 11 24 24 H 0.96701 * 114.00112 * 90.00492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0978 1.6964 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0977 1.6964 1.2125 7 6 2.0088 -1.2104 0.0005 8 1 3.0544 -1.2305 -0.2689 9 6 1.3494 -2.4039 0.3523 10 6 0.2168 -2.3693 1.1954 11 6 -0.4216 -3.5119 1.5312 12 6 0.0307 -4.7725 1.0517 13 6 -0.5071 -6.0458 1.2989 14 6 0.1225 -7.0623 0.7181 15 9 -0.2415 -8.3582 0.8343 16 16 1.4900 -6.4909 -0.2213 17 6 1.1560 -4.8197 0.2200 18 6 1.8184 -3.6432 -0.1295 19 8 2.9084 -3.6907 -0.9360 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1440 -1.4230 1.5706 22 1 -1.2884 -3.4674 2.1738 23 1 -1.3775 -6.1903 1.9217 24 1 2.7036 -3.6216 -1.8786 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306978178.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:40 Heat of formation + Delta-G solvation = -57.212915 kcal Electronic energy + Delta-G solvation = -13981.067186 eV Core-core repulsion = 11286.010094 eV Total energy + Delta-G solvation = -2695.057092 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.22443 -38.66049 -36.10679 -34.85144 -32.63751 -29.07479 -28.52164 -25.19930 -22.67473 -21.14447 -20.13270 -18.21647 -17.35305 -16.33759 -15.82577 -15.26849 -15.10642 -14.76570 -14.24874 -13.68968 -13.48085 -12.80004 -12.37909 -12.04434 -11.82453 -11.60873 -11.31862 -10.98648 -10.69400 -10.26972 -9.93503 -9.86064 -9.37648 -9.31196 -8.54782 -7.47308 -7.26485 -6.83295 -4.66348 1.57404 2.04125 2.52388 2.72240 2.76104 2.87711 2.91153 3.22715 3.64202 4.25209 5.10116 5.14575 5.54416 6.01285 6.06229 6.36225 6.55077 6.62564 6.69031 6.92102 6.97260 7.33728 7.51059 7.62960 7.75451 8.10665 8.36827 8.39244 8.91122 9.70346 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.051312 B = 0.007112 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.549162 B = 3935.945230 C = 4403.758446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.132 4.132 11 C -0.068 4.068 12 C -0.191 4.191 13 C -0.095 4.095 14 C -0.083 4.083 15 F -0.124 7.124 16 S 0.045 5.955 17 C -0.077 4.077 18 C -0.020 4.020 19 O -0.486 6.486 20 H 0.291 0.709 21 H 0.130 0.870 22 H 0.101 0.899 23 H 0.132 0.868 24 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 -1.261 0.051 1.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.153 4.153 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.442 4.442 8 H 0.113 0.887 9 C 0.109 3.891 10 C -0.152 4.152 11 C -0.089 4.089 12 C -0.196 4.196 13 C -0.126 4.126 14 C -0.216 4.216 15 F -0.104 7.104 16 S 0.303 5.697 17 C -0.193 4.193 18 C -0.073 4.073 19 O -0.293 6.293 20 H 0.102 0.898 21 H 0.147 0.853 22 H 0.119 0.881 23 H 0.150 0.850 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.764 -2.017 -0.258 2.172 hybrid contribution -1.218 1.090 0.359 1.674 sum -0.454 -0.927 0.101 1.037 Atomic orbital electron populations 1.69863 1.07836 1.30652 1.30957 1.26176 0.94960 1.02299 0.91864 0.86106 0.80059 0.78719 0.80601 1.18458 1.19932 1.18283 1.19687 0.98448 0.90356 1.35690 0.88719 1.17779 0.90744 0.91120 0.89454 1.20892 0.97911 0.97362 0.98996 1.20353 0.98675 0.90673 0.99209 1.17188 0.99900 0.92886 1.09632 1.19912 1.00625 0.91275 1.00823 1.21070 1.05791 0.80973 1.13724 1.91370 1.90876 1.32812 1.95312 1.83885 1.30172 1.00323 1.55273 1.22484 0.99223 0.94211 1.03398 1.17433 0.95647 0.89692 1.04512 1.84804 1.30018 1.95544 1.18892 0.89821 0.85265 0.88095 0.85034 0.79276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.38 10.96 55.54 0.61 -16.77 14 2 C 0.07 1.52 5.15 -17.34 -0.09 1.43 14 3 Si 0.92 16.53 29.59 -169.99 -5.03 11.50 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 14 6 H -0.26 -4.66 7.11 56.52 0.40 -4.25 14 7 C -0.41 -9.88 8.68 -38.03 -0.33 -10.21 14 8 H 0.09 2.23 7.64 -52.49 -0.40 1.83 14 9 C 0.12 2.85 5.57 -106.74 -0.59 2.26 14 10 C -0.13 -3.11 8.57 -39.55 -0.34 -3.45 14 11 C -0.07 -1.50 9.99 -39.15 -0.39 -1.89 14 12 C -0.19 -4.29 5.88 -106.87 -0.63 -4.92 14 13 C -0.09 -1.92 10.14 -40.60 -0.41 -2.34 14 14 C -0.08 -1.71 8.27 28.89 0.24 -1.47 14 15 F -0.12 -2.41 17.32 2.25 0.04 -2.37 14 16 S 0.05 0.93 23.26 -107.50 -2.50 -1.57 14 17 C -0.08 -1.80 6.41 -38.46 -0.25 -2.04 14 18 C -0.02 -0.47 6.76 -38.08 -0.26 -0.73 14 19 O -0.49 -10.76 12.74 -18.74 -0.24 -11.00 14 20 H 0.29 5.90 8.30 -40.82 -0.34 5.56 14 21 H 0.13 3.02 6.19 -52.48 -0.32 2.69 14 22 H 0.10 1.91 8.06 -52.49 -0.42 1.49 14 23 H 0.13 2.31 8.06 -52.49 -0.42 1.89 14 24 H 0.35 6.50 9.06 45.56 0.41 6.91 14 LS Contribution 237.92 15.07 3.59 3.59 Total: -1.00 -25.62 237.92 -6.88 -32.49 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -0.29 Total: 7.50 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.05 Total: -23.36 kcal Atomic # 7 Polarization: -17.38 SS G_CDS: 0.61 Total: -16.77 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.24 Total: -11.00 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -25.62 -6.88 -32.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306978178.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.718 kcal (2) G-P(sol) polarization free energy of solvation -25.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds