Wall clock time and date at job start Mon Mar 30 2020 05:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48497 * 109.47082 * 269.99822 * 3 2 1 5 5 H 1.48500 * 109.47043 * 29.99541 * 3 2 1 6 6 H 1.48498 * 109.47359 * 149.99613 * 3 2 1 7 7 C 1.39539 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00464 * 199.89893 * 7 2 1 9 9 C 1.40674 * 120.00036 * 19.89483 * 7 2 1 10 10 C 1.37459 * 123.23522 * 34.30441 * 9 7 2 11 11 O 1.35253 * 124.57880 * 359.97438 * 10 9 7 12 12 S 1.75178 * 110.84791 * 180.27269 * 10 9 7 13 13 C 1.75878 * 92.75340 * 359.75325 * 12 10 9 14 14 C 1.39844 * 129.69832 * 179.97438 * 13 12 10 15 15 C 1.37653 * 120.53534 * 180.02562 * 14 13 12 16 16 C 1.38613 * 120.13997 * 359.97438 * 15 14 13 17 17 C 1.37611 * 120.20575 * 0.02562 * 16 15 14 18 18 F 1.35103 * 119.80075 * 180.02562 * 17 16 15 19 19 C 1.39240 * 110.63385 * 0.02562 * 13 12 10 20 20 H 0.96999 * 119.99889 * 0.02562 * 1 2 3 21 21 H 0.96707 * 114.00398 * 180.30004 * 11 10 9 22 22 H 1.08002 * 119.73364 * 0.02562 * 14 13 12 23 23 H 1.08002 * 119.92898 * 180.02562 * 15 14 13 24 24 H 1.07998 * 119.89680 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.4941 2.0464 -1.4000 5 1 1.4439 2.6527 0.6999 6 1 3.5441 1.4403 0.7001 7 6 2.0104 -1.2084 0.0005 8 1 3.0420 -1.2362 0.3189 9 6 1.3700 -2.3905 -0.4135 10 6 0.4201 -2.4247 -1.4064 11 8 -0.0090 -1.3431 -2.0958 12 16 -0.1660 -4.0571 -1.6527 13 6 0.8865 -4.7137 -0.4059 14 6 1.0294 -6.0315 0.0396 15 6 1.9220 -6.3382 1.0416 16 6 2.6901 -5.3394 1.6192 17 6 2.5642 -4.0364 1.1948 18 9 3.3172 -3.0694 1.7632 19 6 1.6536 -3.7045 0.1702 20 1 -0.4850 0.8400 -0.0004 21 1 -0.6855 -1.5414 -2.7578 22 1 0.4345 -6.8151 -0.4061 23 1 2.0247 -7.3594 1.3778 24 1 3.3889 -5.5843 2.4054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307003953.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:33 Heat of formation + Delta-G solvation = -45.570242 kcal Electronic energy + Delta-G solvation = -14387.397917 eV Core-core repulsion = 11692.845690 eV Total energy + Delta-G solvation = -2694.552228 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.97652 -38.38410 -36.52756 -33.93416 -32.18966 -29.76388 -27.93293 -25.40860 -22.66381 -21.61226 -19.67475 -18.11420 -16.75908 -16.66541 -15.38614 -15.06334 -14.76758 -14.62969 -14.42882 -13.32454 -13.05569 -12.90952 -12.41728 -11.90640 -11.77668 -11.58263 -11.21377 -10.93926 -10.82497 -10.24454 -10.21330 -9.65674 -9.37885 -8.93782 -8.32579 -7.23855 -6.67127 -6.42809 -4.11006 1.65748 1.72943 2.45554 3.00037 3.13485 3.22296 3.26775 3.66182 4.16026 4.35246 4.97862 5.19493 5.30540 5.34583 5.68994 5.70819 6.07219 6.35692 6.63926 6.67179 6.83787 6.98919 7.34705 7.55994 7.74582 8.48868 8.60478 9.04155 9.10133 10.48689 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.011510 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.638614 B = 2432.071027 C = 3343.793186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.438 4.438 8 H 0.079 0.921 9 C 0.048 3.952 10 C -0.087 4.087 11 O -0.403 6.403 12 S -0.026 6.026 13 C -0.113 4.113 14 C -0.101 4.101 15 C -0.108 4.108 16 C -0.175 4.175 17 C 0.135 3.865 18 F -0.132 7.132 19 C -0.066 4.066 20 H 0.273 0.727 21 H 0.354 0.646 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -7.292 -0.450 7.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.097 0.903 9 C 0.039 3.961 10 C -0.248 4.248 11 O -0.202 6.202 12 S 0.232 5.768 13 C -0.229 4.229 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.197 4.197 17 C 0.114 3.886 18 F -0.110 7.110 19 C -0.077 4.077 20 H 0.084 0.916 21 H 0.200 0.800 22 H 0.136 0.864 23 H 0.144 0.856 24 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.102 -7.269 -1.069 7.348 hybrid contribution 0.816 1.352 0.653 1.709 sum 0.713 -5.917 -0.416 5.974 Atomic orbital electron populations 1.69916 1.07321 1.28423 1.34385 1.25559 0.94511 1.00378 0.93399 0.86388 0.80442 0.81375 0.78903 1.19697 1.20775 1.18962 1.18666 0.98446 0.90556 1.39407 0.90303 1.16608 0.96489 0.90205 0.92782 1.22121 1.11485 0.85106 1.06042 1.84893 1.56852 1.27618 1.50832 1.83203 1.47186 1.05180 1.41236 1.21846 1.02386 0.96432 1.02243 1.20373 1.00173 0.93495 0.98457 1.20490 0.96908 0.98370 0.97123 1.20704 1.04023 0.91258 1.03751 1.17539 0.92051 0.85139 0.93846 1.91465 1.73697 1.62762 1.83105 1.19387 0.96970 0.94698 0.96604 0.91625 0.79958 0.86370 0.85636 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.33 11.05 55.53 0.61 -20.71 14 2 C 0.08 2.14 4.73 -17.31 -0.08 2.06 14 3 Si 0.90 20.48 29.60 -169.99 -5.03 15.45 14 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 14 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 7 C -0.44 -12.34 8.39 -38.18 -0.32 -12.66 14 8 H 0.08 2.20 6.94 -52.49 -0.36 1.83 14 9 C 0.05 1.31 5.51 -105.91 -0.58 0.72 14 10 C -0.09 -2.21 7.04 30.45 0.21 -2.00 14 11 O -0.40 -9.90 10.85 -17.45 -0.19 -10.09 14 12 S -0.03 -0.54 23.13 -107.50 -2.49 -3.03 14 13 C -0.11 -2.44 6.41 -38.61 -0.25 -2.69 14 14 C -0.10 -1.77 10.06 -39.19 -0.39 -2.17 14 15 C -0.11 -1.71 10.03 -39.66 -0.40 -2.11 14 16 C -0.18 -3.08 9.99 -39.67 -0.40 -3.47 14 17 C 0.14 2.97 7.34 -38.75 -0.28 2.69 14 18 F -0.13 -3.03 15.51 2.25 0.03 -2.99 14 19 C -0.07 -1.61 6.01 -105.12 -0.63 -2.24 14 20 H 0.27 6.98 8.31 -40.82 -0.34 6.64 14 21 H 0.35 6.82 9.00 45.56 0.41 7.23 14 22 H 0.12 1.72 8.06 -52.49 -0.42 1.30 14 23 H 0.13 1.48 8.06 -52.49 -0.42 1.06 14 24 H 0.13 1.84 8.06 -52.49 -0.42 1.42 14 LS Contribution 235.38 15.07 3.55 3.55 Total: -1.00 -30.30 235.38 -6.99 -37.29 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -0.36 Total: 2.40 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.12 Total: -21.86 kcal Atomic # 7 Polarization: -21.33 SS G_CDS: 0.61 Total: -20.71 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.19 Total: -10.09 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.03 Total: -2.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.49 Total: -3.03 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.30 -6.99 -37.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307003953.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.281 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds