Wall clock time and date at job start Mon Mar 30 2020 05:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48497 * 109.47082 * 269.99822 * 3 2 1 5 5 H 1.48500 * 109.47043 * 29.99541 * 3 2 1 6 6 H 1.48498 * 109.47359 * 149.99613 * 3 2 1 7 7 C 1.39539 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00464 * 199.89893 * 7 2 1 9 9 C 1.40674 * 120.00036 * 19.89483 * 7 2 1 10 10 C 1.37459 * 123.23522 * 34.30441 * 9 7 2 11 11 O 1.35253 * 124.57880 * 359.97438 * 10 9 7 12 12 S 1.75178 * 110.84791 * 180.27269 * 10 9 7 13 13 C 1.75878 * 92.75340 * 359.75325 * 12 10 9 14 14 C 1.39844 * 129.69832 * 179.97438 * 13 12 10 15 15 C 1.37653 * 120.53534 * 180.02562 * 14 13 12 16 16 C 1.38613 * 120.13997 * 359.97438 * 15 14 13 17 17 C 1.37611 * 120.20575 * 0.02562 * 16 15 14 18 18 F 1.35103 * 119.80075 * 180.02562 * 17 16 15 19 19 C 1.39240 * 110.63385 * 0.02562 * 13 12 10 20 20 H 0.96999 * 119.99889 * 0.02562 * 1 2 3 21 21 H 0.96707 * 114.00398 * 180.30004 * 11 10 9 22 22 H 1.08002 * 119.73364 * 0.02562 * 14 13 12 23 23 H 1.08002 * 119.92898 * 180.02562 * 15 14 13 24 24 H 1.07998 * 119.89680 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.4941 2.0464 -1.4000 5 1 1.4439 2.6527 0.6999 6 1 3.5441 1.4403 0.7001 7 6 2.0104 -1.2084 0.0005 8 1 3.0420 -1.2362 0.3189 9 6 1.3700 -2.3905 -0.4135 10 6 0.4201 -2.4247 -1.4064 11 8 -0.0090 -1.3431 -2.0958 12 16 -0.1660 -4.0571 -1.6527 13 6 0.8865 -4.7137 -0.4059 14 6 1.0294 -6.0315 0.0396 15 6 1.9220 -6.3382 1.0416 16 6 2.6901 -5.3394 1.6192 17 6 2.5642 -4.0364 1.1948 18 9 3.3172 -3.0694 1.7632 19 6 1.6536 -3.7045 0.1702 20 1 -0.4850 0.8400 -0.0004 21 1 -0.6855 -1.5414 -2.7578 22 1 0.4345 -6.8151 -0.4061 23 1 2.0247 -7.3594 1.3778 24 1 3.3889 -5.5843 2.4054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307003953.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:33 Heat of formation + Delta-G solvation = -65.720570 kcal Electronic energy + Delta-G solvation = -14388.271701 eV Core-core repulsion = 11692.845690 eV Total energy + Delta-G solvation = -2695.426012 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.65040 -39.96221 -38.36116 -35.77375 -33.99479 -31.27774 -29.66832 -27.30172 -24.26566 -23.20717 -21.47881 -19.85468 -18.66035 -18.31941 -16.94625 -16.85210 -16.43622 -16.28805 -16.09081 -15.13836 -14.78309 -14.55501 -14.09211 -13.57979 -13.39615 -13.27837 -13.00446 -12.78692 -12.48655 -11.99595 -11.85120 -11.30260 -11.19969 -10.80050 -9.99075 -8.85929 -8.59482 -8.28951 -6.12269 0.07830 0.22535 0.82186 1.18425 1.32101 1.35710 1.46841 1.90459 2.28790 2.70761 3.26258 3.46611 3.59739 4.05733 4.24481 4.35142 4.53912 4.86842 5.14552 5.25771 5.32747 5.39409 5.45762 5.80288 6.06686 6.45452 6.72132 7.03578 7.30516 8.53614 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.011510 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.638614 B = 2432.071027 C = 3343.793186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.477 4.477 8 H 0.061 0.939 9 C 0.004 3.996 10 C -0.104 4.104 11 O -0.423 6.423 12 S 0.025 5.975 13 C -0.133 4.133 14 C -0.096 4.096 15 C -0.084 4.084 16 C -0.155 4.155 17 C 0.095 3.905 18 F -0.150 7.150 19 C -0.111 4.111 20 H 0.277 0.723 21 H 0.372 0.628 22 H 0.157 0.843 23 H 0.185 0.815 24 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -10.043 -0.058 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.510 4.510 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.265 4.265 11 O -0.224 6.224 12 S 0.283 5.717 13 C -0.248 4.248 14 C -0.119 4.119 15 C -0.104 4.104 16 C -0.176 4.176 17 C 0.074 3.926 18 F -0.129 7.129 19 C -0.120 4.120 20 H 0.087 0.913 21 H 0.221 0.779 22 H 0.175 0.825 23 H 0.202 0.798 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.095 -10.036 -0.680 10.060 hybrid contribution 0.824 1.920 0.542 2.159 sum 0.729 -8.116 -0.138 8.150 Atomic orbital electron populations 1.69966 1.08374 1.29189 1.36092 1.26281 0.95316 1.03164 0.92822 0.85431 0.79140 0.77579 0.78875 1.19476 1.19371 1.18984 1.18780 0.98085 0.92327 1.41825 0.92051 1.17140 0.97821 0.91719 0.93837 1.22486 1.11195 0.87426 1.05362 1.84844 1.57668 1.28518 1.51411 1.82752 1.46660 1.01167 1.41140 1.22306 1.02264 0.97776 1.02464 1.20935 1.00351 0.92342 0.98300 1.21196 0.94020 1.00385 0.94767 1.21236 1.03670 0.89379 1.03350 1.18061 0.92967 0.86699 0.94832 1.91407 1.74190 1.63916 1.83402 1.19543 0.99426 0.94359 0.98696 0.91339 0.77939 0.82491 0.79826 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.31 11.05 21.78 0.24 -46.07 14 2 C 0.04 2.16 4.73 85.09 0.40 2.56 14 3 Si 0.97 43.75 29.60 68.60 2.03 45.78 14 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 14 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 14 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 14 7 C -0.48 -28.42 8.39 23.18 0.19 -28.22 14 8 H 0.06 3.69 6.94 -2.91 -0.02 3.67 14 9 C 0.00 0.22 5.51 -20.70 -0.11 0.11 14 10 C -0.10 -5.46 7.04 67.64 0.48 -4.98 14 11 O -0.42 -21.52 10.85 -85.36 -0.93 -22.45 14 12 S 0.03 1.04 23.13 -56.49 -1.31 -0.26 14 13 C -0.13 -5.50 6.41 22.90 0.15 -5.36 14 14 C -0.10 -2.91 10.06 22.52 0.23 -2.69 14 15 C -0.08 -2.14 10.03 22.22 0.22 -1.92 14 16 C -0.15 -4.88 9.99 22.21 0.22 -4.65 14 17 C 0.10 4.17 7.34 22.81 0.17 4.34 14 18 F -0.15 -7.18 15.51 44.97 0.70 -6.48 14 19 C -0.11 -5.46 6.01 -20.18 -0.12 -5.58 14 20 H 0.28 14.63 8.31 -92.71 -0.77 13.86 14 21 H 0.37 14.71 9.00 -74.05 -0.67 14.05 14 22 H 0.16 3.57 8.06 -2.91 -0.02 3.55 14 23 H 0.18 2.73 8.06 -2.91 -0.02 2.70 14 24 H 0.16 3.93 8.06 -2.91 -0.02 3.90 14 Total: -1.00 -70.40 235.38 3.15 -67.25 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.59 Total: 8.63 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 1.82 Total: -46.40 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.24 Total: -46.07 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.93 Total: -22.45 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.70 Total: -6.48 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.31 Total: -0.26 kcal Total: -70.40 3.15 -67.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307003953.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.529 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds