Wall clock time and date at job start Mon Mar 30 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20752 * 119.99811 * 2 1 4 4 C 1.50696 * 119.99818 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.46886 * 155.00347 * 4 2 1 6 6 Cl 1.80301 * 109.47562 * 35.00055 * 4 2 1 7 7 C 1.50702 * 109.47198 * 274.99838 * 4 2 1 8 8 C 1.38637 * 119.74898 * 245.00435 * 7 4 2 9 9 C 1.37624 * 120.24722 * 179.97438 * 8 7 4 10 10 C 1.40711 * 119.74269 * 359.97438 * 9 8 7 11 11 C 1.41398 * 120.24178 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99716 * 155.56930 * 11 10 9 13 13 C 1.39944 * 120.00134 * 335.30554 * 11 10 9 14 14 N 1.30821 * 119.99661 * 342.55151 * 13 11 10 15 15 Si 1.86796 * 119.99958 * 162.56169 * 13 11 10 16 16 H 1.48497 * 109.47620 * 59.99793 * 15 13 11 17 17 H 1.48504 * 109.47201 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46993 * 299.99311 * 15 13 11 19 19 C 1.40714 * 119.51475 * 0.27850 * 10 9 8 20 20 C 1.37622 * 119.74394 * 359.41858 * 19 10 9 21 21 H 1.09005 * 109.46918 * 240.00213 * 1 2 3 22 22 H 1.08995 * 109.47255 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47304 * 120.00372 * 1 2 3 24 24 H 1.07997 * 119.87818 * 359.97438 * 8 7 4 25 25 H 1.07993 * 120.12560 * 179.97438 * 9 8 7 26 26 H 0.97001 * 119.99746 * 180.02562 * 14 13 11 27 27 H 1.08002 * 120.13270 * 179.70378 * 19 10 9 28 28 H 1.07995 * 119.87548 * 180.32050 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 3.2488 -1.1542 -0.4338 6 17 1.3551 -2.5223 -0.9739 7 6 2.4044 -1.8014 1.4162 8 6 3.6639 -1.8925 1.9885 9 6 3.8071 -2.3439 3.2807 10 6 2.6692 -2.7131 4.0214 11 6 2.8042 -3.1788 5.3497 12 1 1.9784 -3.0890 6.0399 13 6 4.0060 -3.7610 5.7683 14 7 4.8697 -4.1869 4.8828 15 14 4.3766 -3.9301 7.5913 16 1 3.3304 -4.7655 8.2338 17 1 5.7025 -4.5749 7.7691 18 1 4.3915 -2.5850 8.2202 19 6 1.3963 -2.6215 3.4285 20 6 1.2763 -2.1615 2.1370 21 1 -0.3633 -0.5138 0.8901 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3634 -0.5139 -0.8899 24 1 4.5358 -1.6083 1.4182 25 1 4.7892 -2.4145 3.7244 26 1 5.7025 -4.5908 5.1730 27 1 0.5166 -2.9068 3.9862 28 1 0.3000 -2.0854 1.6816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307008280.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:54 Heat of formation + Delta-G solvation = -55.729510 kcal Electronic energy + Delta-G solvation = -14199.581134 eV Core-core repulsion = 11626.004966 eV Total energy + Delta-G solvation = -2573.576168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77462 -39.31728 -37.01819 -35.73820 -33.18417 -31.61611 -30.76958 -29.12047 -26.10226 -23.00895 -22.36484 -20.61267 -19.29472 -17.41971 -16.97962 -16.91179 -16.66585 -15.76587 -15.36158 -15.29726 -14.36116 -14.13392 -13.92276 -13.49843 -13.16210 -13.13908 -12.96231 -12.79519 -12.66722 -12.28774 -12.04089 -11.70966 -11.43592 -11.26176 -11.03911 -10.66981 -9.45394 -9.29965 -8.70313 -6.40799 0.39240 0.95757 1.09686 1.32992 1.39051 1.49819 1.57978 2.18177 2.63222 3.03109 3.67556 3.80681 3.89800 4.22173 4.40066 4.46822 4.63039 4.66950 4.99941 5.08502 5.11452 5.28463 5.35817 5.62382 5.82027 6.03471 6.05751 6.28848 6.29657 6.62113 6.86725 6.94570 8.25736 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.043607 B = 0.006080 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.940661 B = 4604.400948 C = 4680.067872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.373 3.627 3 O -0.486 6.486 4 C 0.023 3.977 5 H 0.116 0.884 6 Cl -0.164 7.164 7 C -0.230 4.230 8 C -0.085 4.085 9 C -0.193 4.193 10 C 0.088 3.912 11 C -0.491 4.491 12 H 0.082 0.918 13 C 0.036 3.964 14 N -0.817 5.817 15 Si 0.983 3.017 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.261 1.261 19 C -0.241 4.241 20 C -0.060 4.060 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.291 0.709 27 H 0.106 0.894 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 2.715 -5.470 8.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.251 3.749 3 O -0.362 6.362 4 C -0.021 4.021 5 H 0.134 0.866 6 Cl -0.137 7.137 7 C -0.232 4.232 8 C -0.103 4.103 9 C -0.212 4.212 10 C 0.085 3.915 11 C -0.520 4.520 12 H 0.100 0.900 13 C -0.180 4.180 14 N -0.442 5.442 15 Si 0.803 3.197 16 H -0.181 1.181 17 H -0.192 1.192 18 H -0.185 1.185 19 C -0.261 4.261 20 C -0.078 4.078 21 H 0.124 0.876 22 H 0.113 0.887 23 H 0.136 0.864 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.866 3.041 -5.591 8.011 hybrid contribution 0.528 -0.480 0.709 1.006 sum -4.337 2.561 -4.882 7.015 Atomic orbital electron populations 1.22413 0.90827 1.06131 1.06482 1.24999 0.94026 0.88045 0.67852 1.90402 1.73166 1.34749 1.37842 1.23232 0.98164 0.88281 0.92400 0.86571 1.98700 1.78699 1.61977 1.74336 1.18703 0.94116 1.16530 0.93822 1.20759 0.95896 0.98378 0.95287 1.21237 0.98958 1.05722 0.95300 1.18061 0.92070 0.88039 0.93325 1.19941 0.99799 1.35206 0.97024 0.90033 1.26802 0.94660 0.91921 1.04639 1.69861 1.08887 1.27196 1.38219 0.85235 0.78523 0.79635 0.76286 1.18143 1.19236 1.18509 1.21199 0.96730 1.11644 0.96480 1.20701 0.97251 0.96252 0.93566 0.87606 0.88674 0.86416 0.87551 0.87893 0.89856 0.87583 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.55 9.40 71.24 0.67 -3.88 15 2 C 0.37 11.54 6.19 29.10 0.18 11.72 15 3 O -0.49 -17.94 17.83 -1.43 -0.03 -17.97 15 4 C 0.02 0.76 3.36 29.10 0.10 0.86 15 5 H 0.12 3.70 7.87 -2.38 -0.02 3.68 15 6 Cl -0.16 -4.74 26.70 -2.72 -0.07 -4.81 15 7 C -0.23 -9.23 4.86 -19.67 -0.10 -9.32 15 8 C -0.08 -3.82 9.64 22.22 0.21 -3.61 15 9 C -0.19 -9.91 8.70 22.73 0.20 -9.71 15 10 C 0.09 4.57 5.57 -21.29 -0.12 4.45 15 11 C -0.49 -25.53 9.05 23.46 0.21 -25.32 15 12 H 0.08 4.04 7.91 -2.91 -0.02 4.02 15 13 C 0.04 1.76 5.15 85.26 0.44 2.20 15 14 N -0.82 -41.55 10.95 21.83 0.24 -41.31 15 15 Si 0.98 36.84 29.59 68.60 2.03 38.87 15 16 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 17 H -0.27 -9.54 7.11 99.48 0.71 -8.83 15 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 19 C -0.24 -11.14 9.80 22.73 0.22 -10.92 15 20 C -0.06 -2.39 8.62 22.22 0.19 -2.19 15 21 H 0.11 2.32 6.10 -2.38 -0.01 2.31 15 22 H 0.09 1.90 8.12 -2.39 -0.02 1.88 15 23 H 0.12 2.17 7.35 -2.39 -0.02 2.16 15 24 H 0.11 4.34 7.94 -2.91 -0.02 4.32 15 25 H 0.10 5.56 6.16 -2.91 -0.02 5.55 15 26 H 0.29 13.37 8.30 -92.71 -0.77 12.61 15 27 H 0.11 4.56 8.06 -2.91 -0.02 4.54 15 28 H 0.13 4.20 6.14 -2.91 -0.02 4.18 15 Total: -1.00 -57.59 260.67 5.56 -52.03 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.18 Total: 18.91 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 2.21 Total: -45.72 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.24 Total: -41.31 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.03 Total: -17.97 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 17 Polarization: -4.74 SS G_CDS: -0.07 Total: -4.81 kcal Total: -57.59 5.56 -52.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307008280.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.699 kcal (2) G-P(sol) polarization free energy of solvation -57.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds