Wall clock time and date at job start Mon Mar 30 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30980 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48500 * 109.47266 * 275.28491 * 3 2 1 5 5 H 1.48500 * 109.47274 * 35.28831 * 3 2 1 6 6 H 1.48501 * 109.47113 * 155.28514 * 3 2 1 7 7 C 1.39814 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99933 * 340.56705 * 7 2 1 9 9 C 1.40800 * 120.00403 * 160.56127 * 7 2 1 10 10 C 1.41451 * 120.26667 * 316.35589 * 9 7 2 11 11 F 1.35092 * 119.80837 * 359.97438 * 10 9 7 12 12 C 1.35308 * 120.38331 * 180.02562 * 10 9 7 13 13 C 1.42196 * 121.01233 * 359.94919 * 12 10 9 14 14 C 1.40522 * 128.51579 * 180.02562 * 13 12 10 15 15 C 1.32487 * 115.87068 * 179.97438 * 14 13 12 16 16 S 1.75479 * 110.77823 * 359.97438 * 15 14 13 17 17 C 1.39969 * 119.08649 * 0.02562 * 13 12 10 18 18 C 1.39559 * 120.17765 * 359.77318 * 17 13 12 19 19 O 1.35675 * 120.05923 * 180.30254 * 18 17 13 20 20 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.49375 * 179.97438 * 12 10 9 22 22 H 1.08005 * 122.06511 * 359.97438 * 14 13 12 23 23 H 1.08000 * 124.60709 * 180.02562 * 15 14 13 24 24 H 0.96699 * 113.99552 * 90.00048 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 2.3795 2.1110 -1.3941 5 1 1.5015 2.6179 0.8088 6 1 3.5927 1.4106 0.5854 7 6 2.0090 -1.2108 0.0005 8 1 1.5152 -2.1193 0.3121 9 6 3.3568 -1.2457 -0.4052 10 6 3.7744 -0.5327 -1.5533 11 9 2.8754 0.1839 -2.2627 12 6 5.0690 -0.5650 -1.9456 13 6 6.0366 -1.3109 -1.2181 14 6 7.4098 -1.4534 -1.4803 15 6 8.0844 -2.2145 -0.6313 16 16 7.0249 -2.8436 0.6181 17 6 5.6345 -2.0198 -0.0802 18 6 4.3016 -1.9871 0.3321 19 8 3.9156 -2.6702 1.4390 20 1 -0.4850 0.8400 -0.0004 21 1 5.3720 -0.0156 -2.8247 22 1 7.8858 -0.9723 -2.3219 23 1 9.1427 -2.4192 -0.6985 24 1 3.9751 -2.1586 2.2574 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307012610.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:23 Heat of formation + Delta-G solvation = -46.750613 kcal Electronic energy + Delta-G solvation = -14468.699420 eV Core-core repulsion = 11774.096008 eV Total energy + Delta-G solvation = -2694.603413 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.99796 -38.76235 -36.37556 -34.38666 -33.03938 -29.72262 -28.71632 -25.27390 -22.61309 -21.48349 -19.95603 -18.42965 -17.28312 -16.32979 -16.09343 -15.47879 -15.25342 -14.54631 -13.86690 -13.71903 -13.28146 -13.06524 -12.59989 -12.43780 -12.09446 -11.73589 -11.28239 -10.92618 -10.55672 -10.24336 -10.06540 -9.72885 -9.69659 -9.31056 -8.68270 -7.59315 -7.18660 -6.96510 -4.69898 1.42213 2.05270 2.30862 2.73223 2.83538 3.06153 3.08609 3.19455 3.82218 4.15558 4.77000 5.06872 5.28469 5.67152 5.78795 5.90601 6.24842 6.32451 6.52803 6.66992 6.88436 7.02720 7.12406 7.27878 7.57164 8.03248 8.13855 8.42095 8.71567 9.80105 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.036022 B = 0.010200 C = 0.008801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.110875 B = 2744.459926 C = 3180.683999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.086 3.914 3 Si 0.906 3.094 4 H -0.254 1.254 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.420 4.420 8 H 0.107 0.893 9 C 0.058 3.942 10 C 0.023 3.977 11 F -0.139 7.139 12 C -0.091 4.091 13 C -0.168 4.168 14 C -0.080 4.080 15 C -0.253 4.253 16 S 0.040 5.960 17 C -0.096 4.096 18 C 0.026 3.974 19 O -0.478 6.478 20 H 0.291 0.709 21 H 0.117 0.883 22 H 0.127 0.873 23 H 0.152 0.848 24 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 1.106 -0.005 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.179 1.179 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.447 4.447 8 H 0.125 0.875 9 C 0.051 3.949 10 C 0.003 3.997 11 F -0.118 7.118 12 C -0.113 4.113 13 C -0.174 4.174 14 C -0.110 4.110 15 C -0.386 4.386 16 S 0.301 5.699 17 C -0.212 4.212 18 C -0.027 4.027 19 O -0.286 6.286 20 H 0.101 0.899 21 H 0.135 0.865 22 H 0.145 0.855 23 H 0.169 0.831 24 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.629 -0.175 0.785 8.666 hybrid contribution -0.054 2.106 -1.042 2.350 sum 8.575 1.931 -0.257 8.793 Atomic orbital electron populations 1.69733 1.08159 1.30931 1.31593 1.26231 0.94895 1.01844 0.90630 0.86497 0.81037 0.79788 0.79680 1.17876 1.21174 1.17349 1.19235 0.92234 0.96915 1.36332 0.87487 1.17768 0.94129 0.91883 0.91144 1.17295 0.86750 1.02123 0.93557 1.91276 1.67513 1.75760 1.77259 1.20245 0.91160 1.00033 0.99814 1.17357 0.93250 1.07039 0.99751 1.19712 0.92503 0.99154 0.99631 1.24720 1.02683 1.09197 1.02040 1.83802 0.99031 1.54777 1.32270 1.22784 0.96323 1.02017 1.00049 1.17181 0.87179 1.06775 0.91582 1.84795 1.88490 1.39879 1.15393 0.89851 0.86477 0.85527 0.83068 0.78379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.03 13.94 55.54 0.77 -19.26 14 2 C 0.09 2.19 4.96 -17.33 -0.09 2.10 14 3 Si 0.91 20.25 24.73 -169.99 -4.20 16.04 14 4 H -0.25 -5.67 6.29 56.52 0.36 -5.31 14 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 14 6 H -0.25 -5.66 7.11 56.52 0.40 -5.26 14 7 C -0.42 -11.00 8.89 -38.02 -0.34 -11.34 14 8 H 0.11 2.99 8.06 -52.49 -0.42 2.56 14 9 C 0.06 1.44 4.68 -106.69 -0.50 0.94 14 10 C 0.02 0.55 5.56 -39.40 -0.22 0.33 14 11 F -0.14 -3.35 12.88 2.25 0.03 -3.32 14 12 C -0.09 -1.92 9.95 -39.11 -0.39 -2.31 14 13 C -0.17 -3.48 5.88 -106.87 -0.63 -4.11 14 14 C -0.08 -1.39 10.13 -40.64 -0.41 -1.80 14 15 C -0.25 -4.14 11.09 28.82 0.32 -3.82 14 16 S 0.04 0.73 23.27 -107.50 -2.50 -1.77 14 17 C -0.10 -2.09 6.41 -38.44 -0.25 -2.33 14 18 C 0.03 0.60 6.76 -38.07 -0.26 0.35 14 19 O -0.48 -10.39 12.92 -18.73 -0.24 -10.64 14 20 H 0.29 6.71 8.30 -40.82 -0.34 6.37 14 21 H 0.12 2.11 8.06 -52.48 -0.42 1.69 14 22 H 0.13 1.82 8.06 -52.48 -0.42 1.40 14 23 H 0.15 1.97 8.06 -52.49 -0.42 1.55 14 24 H 0.36 6.38 9.06 45.56 0.41 6.80 14 LS Contribution 232.14 15.07 3.50 3.50 Total: -1.00 -27.40 232.14 -5.86 -33.26 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -0.46 Total: 4.17 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -2.76 Total: -21.99 kcal Atomic # 7 Polarization: -20.03 SS G_CDS: 0.77 Total: -19.26 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.24 Total: -10.64 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.03 Total: -3.32 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.20 Total: 16.04 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.50 Total: -1.77 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.40 -5.86 -33.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307012610.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.487 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds