Wall clock time and date at job start Mon Mar 30 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30980 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48500 * 109.47266 * 275.28491 * 3 2 1 5 5 H 1.48500 * 109.47274 * 35.28831 * 3 2 1 6 6 H 1.48501 * 109.47113 * 155.28514 * 3 2 1 7 7 C 1.39814 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99933 * 340.56705 * 7 2 1 9 9 C 1.40800 * 120.00403 * 160.56127 * 7 2 1 10 10 C 1.41451 * 120.26667 * 316.35589 * 9 7 2 11 11 F 1.35092 * 119.80837 * 359.97438 * 10 9 7 12 12 C 1.35308 * 120.38331 * 180.02562 * 10 9 7 13 13 C 1.42196 * 121.01233 * 359.94919 * 12 10 9 14 14 C 1.40522 * 128.51579 * 180.02562 * 13 12 10 15 15 C 1.32487 * 115.87068 * 179.97438 * 14 13 12 16 16 S 1.75479 * 110.77823 * 359.97438 * 15 14 13 17 17 C 1.39969 * 119.08649 * 0.02562 * 13 12 10 18 18 C 1.39559 * 120.17765 * 359.77318 * 17 13 12 19 19 O 1.35675 * 120.05923 * 180.30254 * 18 17 13 20 20 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.49375 * 179.97438 * 12 10 9 22 22 H 1.08005 * 122.06511 * 359.97438 * 14 13 12 23 23 H 1.08000 * 124.60709 * 180.02562 * 15 14 13 24 24 H 0.96699 * 113.99552 * 90.00048 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 2.3795 2.1110 -1.3941 5 1 1.5015 2.6179 0.8088 6 1 3.5927 1.4106 0.5854 7 6 2.0090 -1.2108 0.0005 8 1 1.5152 -2.1193 0.3121 9 6 3.3568 -1.2457 -0.4052 10 6 3.7744 -0.5327 -1.5533 11 9 2.8754 0.1839 -2.2627 12 6 5.0690 -0.5650 -1.9456 13 6 6.0366 -1.3109 -1.2181 14 6 7.4098 -1.4534 -1.4803 15 6 8.0844 -2.2145 -0.6313 16 16 7.0249 -2.8436 0.6181 17 6 5.6345 -2.0198 -0.0802 18 6 4.3016 -1.9871 0.3321 19 8 3.9156 -2.6702 1.4390 20 1 -0.4850 0.8400 -0.0004 21 1 5.3720 -0.0156 -2.8247 22 1 7.8858 -0.9723 -2.3219 23 1 9.1427 -2.4192 -0.6985 24 1 3.9751 -2.1586 2.2574 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307012610.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:22 Heat of formation + Delta-G solvation = -65.316739 kcal Electronic energy + Delta-G solvation = -14469.504508 eV Core-core repulsion = 11774.096008 eV Total energy + Delta-G solvation = -2695.408500 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.81710 -40.45971 -38.03713 -36.13374 -34.73312 -31.43606 -30.40068 -26.99120 -24.27121 -23.19270 -21.53620 -20.20513 -18.97752 -17.98279 -17.81600 -17.24371 -16.96956 -16.34159 -15.56069 -15.28362 -14.90555 -14.83919 -14.29716 -14.03590 -13.66913 -13.50353 -12.94486 -12.61273 -12.25252 -11.90599 -11.68573 -11.42511 -11.35376 -11.11045 -10.29811 -9.29378 -8.99660 -8.52696 -6.59507 -0.16479 0.28713 0.75651 1.17830 1.24390 1.26855 1.34790 1.52940 2.04384 2.43422 2.95625 3.36251 3.67420 4.13973 4.26218 4.49943 4.60929 4.78742 4.94185 5.05278 5.19770 5.39083 5.52042 5.64781 5.82340 6.08974 6.36056 6.57392 7.05599 8.06698 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.036022 B = 0.010200 C = 0.008801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.110875 B = 2744.459926 C = 3180.683999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.058 3.942 3 Si 0.951 3.049 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.065 0.935 9 C 0.036 3.964 10 C 0.006 3.994 11 F -0.147 7.147 12 C -0.091 4.091 13 C -0.148 4.148 14 C -0.101 4.101 15 C -0.216 4.216 16 S 0.068 5.932 17 C -0.137 4.137 18 C 0.025 3.975 19 O -0.490 6.490 20 H 0.297 0.703 21 H 0.153 0.847 22 H 0.168 0.832 23 H 0.198 0.802 24 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.254 1.413 -0.732 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.159 4.159 3 Si 0.772 3.228 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.083 0.917 9 C 0.030 3.970 10 C -0.015 4.015 11 F -0.126 7.126 12 C -0.112 4.112 13 C -0.155 4.155 14 C -0.130 4.130 15 C -0.349 4.349 16 S 0.329 5.671 17 C -0.253 4.253 18 C -0.027 4.027 19 O -0.299 6.299 20 H 0.108 0.892 21 H 0.171 0.829 22 H 0.185 0.815 23 H 0.215 0.785 24 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 13.152 0.123 0.081 13.153 hybrid contribution -0.923 1.757 -0.812 2.144 sum 12.229 1.880 -0.731 12.394 Atomic orbital electron populations 1.69760 1.09074 1.31738 1.35151 1.26740 0.95345 1.03732 0.90055 0.85824 0.79819 0.77378 0.79743 1.17734 1.19423 1.17951 1.18935 0.93682 0.96166 1.40973 0.91687 1.17941 0.93959 0.93209 0.91889 1.17526 0.87798 1.02572 0.93589 1.91248 1.68071 1.75943 1.77321 1.20608 0.90031 0.99842 1.00733 1.17967 0.94988 1.04471 0.98076 1.20004 0.90691 1.00590 1.01742 1.25407 1.04408 1.05688 0.99391 1.83843 0.97277 1.53648 1.32315 1.23123 0.97049 1.03580 1.01524 1.17455 0.88022 1.05474 0.91722 1.84701 1.88724 1.40441 1.16055 0.89247 0.82916 0.81512 0.78463 0.76296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.52 13.94 21.81 0.30 -45.22 14 2 C 0.06 3.12 4.96 85.20 0.42 3.55 14 3 Si 0.95 42.66 24.73 68.60 1.70 44.36 14 4 H -0.25 -11.13 6.29 99.48 0.63 -10.51 14 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 14 6 H -0.26 -11.48 7.11 99.48 0.71 -10.78 14 7 C -0.47 -26.34 8.89 23.28 0.21 -26.13 14 8 H 0.07 4.02 8.06 -2.91 -0.02 4.00 14 9 C 0.04 1.87 4.68 -21.20 -0.10 1.77 14 10 C 0.01 0.28 5.56 22.38 0.12 0.41 14 11 F -0.15 -7.13 12.88 44.97 0.58 -6.55 14 12 C -0.09 -3.61 9.95 22.58 0.22 -3.38 14 13 C -0.15 -5.56 5.88 -21.32 -0.13 -5.68 14 14 C -0.10 -2.87 10.13 21.69 0.22 -2.65 14 15 C -0.22 -5.55 11.09 66.69 0.74 -4.81 14 16 S 0.07 2.16 23.27 -56.49 -1.31 0.85 14 17 C -0.14 -5.63 6.41 23.01 0.15 -5.48 14 18 C 0.03 1.20 6.76 23.25 0.16 1.35 14 19 O -0.49 -21.72 12.92 -89.92 -1.16 -22.88 14 20 H 0.30 14.55 8.30 -92.71 -0.77 13.78 14 21 H 0.15 4.86 8.06 -2.91 -0.02 4.83 14 22 H 0.17 3.51 8.06 -2.91 -0.02 3.49 14 23 H 0.20 3.40 8.06 -2.91 -0.02 3.37 14 24 H 0.38 13.70 9.06 -74.06 -0.67 13.03 14 Total: -1.00 -62.30 232.14 2.63 -59.67 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.51 Total: 10.83 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 2.02 Total: -41.06 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.30 Total: -45.22 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.16 Total: -22.88 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.58 Total: -6.55 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.70 Total: 44.36 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.31 Total: 0.85 kcal Total: -62.30 2.63 -59.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307012610.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.646 kcal (2) G-P(sol) polarization free energy of solvation -62.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds