Wall clock time and date at job start Mon Mar 30 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47135 * 2 1 4 4 O 1.21337 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.46600 * 119.99766 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.58578 * 354.44287 * 5 3 2 7 7 C 1.38189 * 120.00076 * 179.72180 * 6 5 3 8 8 Cl 1.73604 * 119.35996 * 180.28004 * 7 6 5 9 9 C 1.38874 * 121.27805 * 0.57002 * 7 6 5 10 10 C 1.37436 * 121.21346 * 359.71123 * 9 7 6 11 11 C 1.40865 * 119.88224 * 0.02562 * 10 9 7 12 12 C 1.40652 * 120.60577 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00464 * 147.67978 * 12 11 10 14 14 C 1.40392 * 119.99908 * 327.68125 * 12 11 10 15 15 N 1.30570 * 120.00178 * 350.30124 * 14 12 11 16 16 Si 1.86802 * 120.00233 * 170.30459 * 14 12 11 17 17 H 1.48495 * 109.47319 * 89.99853 * 16 14 12 18 18 H 1.48497 * 109.47432 * 210.00204 * 16 14 12 19 19 H 1.48510 * 109.46928 * 330.00046 * 16 14 12 20 20 H 1.09007 * 109.46902 * 300.00423 * 1 2 3 21 21 H 1.08996 * 109.47411 * 59.99894 * 1 2 3 22 22 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47133 * 240.00319 * 2 1 3 24 24 H 1.08997 * 109.47084 * 119.99677 * 2 1 3 25 25 H 1.07996 * 119.99672 * 359.97438 * 6 5 3 26 26 H 1.07995 * 119.39599 * 179.69658 * 9 7 6 27 27 H 1.08001 * 120.05820 * 179.97438 * 10 9 7 28 28 H 0.96998 * 120.00359 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2438 2.3431 0.0005 5 6 3.4736 1.6887 -0.0006 6 6 4.3909 0.6421 0.1153 7 6 5.7470 0.9078 0.1076 8 17 6.8726 -0.4067 0.2454 9 6 6.2267 2.2064 -0.0022 10 6 5.3698 3.2752 -0.1132 11 6 3.9775 3.0611 -0.1162 12 6 3.0867 4.1438 -0.2285 13 1 2.1412 4.0150 -0.7342 14 6 3.4268 5.3920 0.3169 15 7 4.4745 5.5040 1.0880 16 14 2.3804 6.8926 -0.0607 17 1 1.3081 7.0177 0.9590 18 1 3.2318 8.1090 -0.0354 19 1 1.7692 6.7442 -1.4060 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.0404 -0.3753 0.2068 26 1 7.2926 2.3797 0.0000 27 1 5.7632 4.2775 -0.1971 28 1 4.7097 6.3665 1.4645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307039895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:16 Heat of formation + Delta-G solvation = -44.976782 kcal Electronic energy + Delta-G solvation = -14382.206730 eV Core-core repulsion = 11809.096835 eV Total energy + Delta-G solvation = -2573.109895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.61621 -36.83891 -35.35644 -33.87648 -32.21119 -29.97411 -29.66907 -25.86450 -24.13288 -21.86871 -20.78469 -18.49044 -17.59106 -15.80359 -15.49265 -14.63311 -14.59009 -14.30428 -13.43921 -13.10117 -12.84907 -12.55333 -11.93861 -11.78783 -11.75864 -11.32705 -11.29960 -11.15182 -10.83207 -10.62874 -10.40217 -10.16042 -10.03047 -9.86050 -9.42307 -8.29202 -7.79905 -7.39888 -7.08135 -4.64859 1.98860 2.56185 2.96229 3.01837 3.06292 3.33547 3.68728 3.76943 4.38565 5.07069 5.32309 5.57505 5.62567 5.88856 5.93567 6.13906 6.19241 6.38927 6.57108 6.65990 6.76335 6.83633 6.92773 7.19580 7.29959 7.58110 7.75349 7.86906 8.33819 8.51842 8.60964 8.91352 9.83153 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.010202 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.348298 B = 2743.911242 C = 4168.123052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.169 4.169 3 C 0.391 3.609 4 O -0.474 6.474 5 C -0.294 4.294 6 C -0.024 4.024 7 C -0.162 4.162 8 Cl -0.132 7.132 9 C -0.076 4.076 10 C -0.149 4.149 11 C 0.141 3.859 12 C -0.395 4.395 13 H 0.109 0.891 14 C 0.067 3.933 15 N -0.772 5.772 16 Si 0.923 3.077 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.256 1.256 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -4.233 -1.355 4.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.207 4.207 3 C 0.275 3.725 4 O -0.354 6.354 5 C -0.297 4.297 6 C -0.044 4.044 7 C -0.189 4.189 8 Cl -0.104 7.104 9 C -0.096 4.096 10 C -0.168 4.168 11 C 0.136 3.864 12 C -0.421 4.421 13 H 0.126 0.874 14 C -0.155 4.155 15 N -0.395 5.395 16 Si 0.746 3.254 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.179 1.179 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.144 0.856 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.028 -3.702 -1.193 4.023 hybrid contribution 0.026 0.360 0.099 0.375 sum -1.002 -3.341 -1.094 3.656 Atomic orbital electron populations 1.21532 0.94861 1.00383 1.02714 1.21957 0.97106 0.98362 1.03245 1.21738 0.88495 0.89337 0.72951 1.90422 1.58483 1.47028 1.39489 1.20902 0.92705 0.93745 1.22337 1.20687 0.90835 0.97357 0.95474 1.19997 0.88813 0.87130 1.22985 1.98228 1.63793 1.50761 1.97663 1.20578 0.98541 0.91024 0.99415 1.21306 0.92873 0.97453 1.05206 1.18694 0.91961 0.90438 0.85279 1.20282 1.03931 0.92074 1.25847 0.87370 1.26312 0.95065 1.01128 0.92996 1.69676 1.22137 1.27442 1.20218 0.86040 0.80005 0.78551 0.80760 1.18908 1.19905 1.17940 0.92488 0.92504 0.93243 0.89738 0.89811 0.87560 0.88157 0.85640 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 37.16 0.34 -1.73 15 2 C -0.17 -2.80 5.12 -27.88 -0.14 -2.94 15 3 C 0.39 8.56 7.08 -30.94 -0.22 8.34 15 4 O -0.47 -11.62 13.40 5.51 0.07 -11.55 15 5 C -0.29 -6.89 6.06 -102.60 -0.62 -7.52 15 6 C -0.02 -0.52 9.22 -39.07 -0.36 -0.88 15 7 C -0.16 -3.47 6.32 -39.36 -0.25 -3.72 15 8 Cl -0.13 -2.45 28.91 -51.86 -1.50 -3.94 15 9 C -0.08 -1.69 9.72 -39.64 -0.39 -2.07 15 10 C -0.15 -3.62 8.64 -38.88 -0.34 -3.95 15 11 C 0.14 3.59 5.67 -104.60 -0.59 3.00 15 12 C -0.40 -10.18 7.86 -37.86 -0.30 -10.48 15 13 H 0.11 2.86 5.96 -52.49 -0.31 2.54 15 14 C 0.07 1.59 5.26 -17.28 -0.09 1.50 15 15 N -0.77 -18.65 11.05 55.57 0.61 -18.04 15 16 Si 0.92 18.20 29.57 -169.99 -5.03 13.17 15 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 20 H 0.06 0.90 8.10 -51.93 -0.42 0.48 15 21 H 0.06 0.89 8.10 -51.93 -0.42 0.46 15 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.08 1.27 7.93 -51.93 -0.41 0.86 15 25 H 0.11 1.95 7.02 -52.49 -0.37 1.58 15 26 H 0.10 2.02 8.06 -52.49 -0.42 1.59 15 27 H 0.13 3.07 6.49 -52.49 -0.34 2.73 15 28 H 0.29 6.28 8.29 -40.82 -0.34 5.94 15 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -26.36 260.65 -7.54 -33.90 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.68 Total: 2.98 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.95 Total: -20.46 kcal Atomic # 7 Polarization: -18.65 SS G_CDS: 0.61 Total: -18.04 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.50 Total: -3.94 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.36 -7.54 -33.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.073 kcal (2) G-P(sol) polarization free energy of solvation -26.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds