Wall clock time and date at job start Mon Mar 30 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47135 * 2 1 4 4 O 1.21337 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.46600 * 119.99766 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.58578 * 354.44287 * 5 3 2 7 7 C 1.38189 * 120.00076 * 179.72180 * 6 5 3 8 8 Cl 1.73604 * 119.35996 * 180.28004 * 7 6 5 9 9 C 1.38874 * 121.27805 * 0.57002 * 7 6 5 10 10 C 1.37436 * 121.21346 * 359.71123 * 9 7 6 11 11 C 1.40865 * 119.88224 * 0.02562 * 10 9 7 12 12 C 1.40652 * 120.60577 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00464 * 147.67978 * 12 11 10 14 14 C 1.40392 * 119.99908 * 327.68125 * 12 11 10 15 15 N 1.30570 * 120.00178 * 350.30124 * 14 12 11 16 16 Si 1.86802 * 120.00233 * 170.30459 * 14 12 11 17 17 H 1.48495 * 109.47319 * 89.99853 * 16 14 12 18 18 H 1.48497 * 109.47432 * 210.00204 * 16 14 12 19 19 H 1.48510 * 109.46928 * 330.00046 * 16 14 12 20 20 H 1.09007 * 109.46902 * 300.00423 * 1 2 3 21 21 H 1.08996 * 109.47411 * 59.99894 * 1 2 3 22 22 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47133 * 240.00319 * 2 1 3 24 24 H 1.08997 * 109.47084 * 119.99677 * 2 1 3 25 25 H 1.07996 * 119.99672 * 359.97438 * 6 5 3 26 26 H 1.07995 * 119.39599 * 179.69658 * 9 7 6 27 27 H 1.08001 * 120.05820 * 179.97438 * 10 9 7 28 28 H 0.96998 * 120.00359 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2438 2.3431 0.0005 5 6 3.4736 1.6887 -0.0006 6 6 4.3909 0.6421 0.1153 7 6 5.7470 0.9078 0.1076 8 17 6.8726 -0.4067 0.2454 9 6 6.2267 2.2064 -0.0022 10 6 5.3698 3.2752 -0.1132 11 6 3.9775 3.0611 -0.1162 12 6 3.0867 4.1438 -0.2285 13 1 2.1412 4.0150 -0.7342 14 6 3.4268 5.3920 0.3169 15 7 4.4745 5.5040 1.0880 16 14 2.3804 6.8926 -0.0607 17 1 1.3081 7.0177 0.9590 18 1 3.2318 8.1090 -0.0354 19 1 1.7692 6.7442 -1.4060 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.0404 -0.3753 0.2068 26 1 7.2926 2.3797 0.0000 27 1 5.7632 4.2775 -0.1971 28 1 4.7097 6.3665 1.4645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307039895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:15 Heat of formation + Delta-G solvation = -57.724251 kcal Electronic energy + Delta-G solvation = -14382.759502 eV Core-core repulsion = 11809.096835 eV Total energy + Delta-G solvation = -2573.662667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34373 -38.57836 -36.99417 -35.63250 -33.64839 -31.70103 -31.42879 -27.61244 -25.69597 -23.52246 -22.50372 -20.14175 -19.40315 -17.50400 -17.19997 -16.25504 -16.08930 -16.01376 -15.08110 -14.78702 -14.53393 -14.16986 -13.60488 -13.47213 -13.21736 -12.93938 -12.85389 -12.55475 -12.37930 -12.10153 -11.92175 -11.86200 -11.68485 -11.53096 -11.15978 -10.01116 -9.57294 -9.19213 -8.84244 -6.51391 0.22075 0.82110 1.33592 1.43987 1.48157 1.65942 1.96098 2.13970 2.60662 3.50067 3.57567 4.21790 4.31971 4.37267 4.37751 4.69956 4.91156 4.97758 5.02788 5.10916 5.15102 5.22394 5.36803 5.42333 5.53447 5.79663 5.92666 6.07891 6.49470 6.67258 6.77229 7.21676 8.09837 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.010202 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.348298 B = 2743.911242 C = 4168.123052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.160 4.160 3 C 0.383 3.617 4 O -0.509 6.509 5 C -0.314 4.314 6 C -0.018 4.018 7 C -0.166 4.166 8 Cl -0.100 7.100 9 C -0.073 4.073 10 C -0.173 4.173 11 C 0.111 3.889 12 C -0.433 4.433 13 H 0.090 0.910 14 C 0.032 3.968 15 N -0.799 5.799 16 Si 0.986 3.014 17 H -0.266 1.266 18 H -0.254 1.254 19 H -0.260 1.260 20 H 0.042 0.958 21 H 0.044 0.956 22 H 0.086 0.914 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.141 0.859 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -5.950 -1.292 6.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C 0.268 3.732 4 O -0.391 6.391 5 C -0.317 4.317 6 C -0.037 4.037 7 C -0.193 4.193 8 Cl -0.072 7.072 9 C -0.092 4.092 10 C -0.192 4.192 11 C 0.107 3.893 12 C -0.460 4.460 13 H 0.108 0.892 14 C -0.187 4.187 15 N -0.424 5.424 16 Si 0.806 3.194 17 H -0.191 1.191 18 H -0.178 1.178 19 H -0.183 1.183 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.159 0.841 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.893 -5.441 -1.128 5.628 hybrid contribution 0.089 0.698 0.093 0.709 sum -0.804 -4.744 -1.035 4.921 Atomic orbital electron populations 1.21532 0.93779 1.02371 1.01524 1.21949 0.98025 0.94415 1.05308 1.22464 0.87707 0.91610 0.71370 1.90407 1.59012 1.48897 1.40805 1.21368 0.94505 0.93660 1.22191 1.20982 0.90436 0.98342 0.93938 1.20174 0.89762 0.87823 1.21568 1.98237 1.62592 1.48886 1.97505 1.20809 0.99274 0.91107 0.98006 1.21235 0.92927 0.97702 1.07329 1.19117 0.92687 0.91761 0.85713 1.20289 1.03794 0.93767 1.28107 0.89183 1.27010 0.96195 1.03089 0.92378 1.69687 1.23287 1.28542 1.20838 0.85137 0.78472 0.75811 0.79997 1.19115 1.17806 1.18329 0.93859 0.93666 0.89541 0.87344 0.87572 0.84109 0.86287 0.86887 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.20 71.98 0.66 -3.09 15 2 C -0.16 -4.85 5.12 29.85 0.15 -4.69 15 3 C 0.38 16.63 7.08 27.87 0.20 16.83 15 4 O -0.51 -25.60 13.40 -3.21 -0.04 -25.64 15 5 C -0.31 -14.71 6.06 -18.56 -0.11 -14.82 15 6 C -0.02 -0.73 9.22 22.60 0.21 -0.52 15 7 C -0.17 -6.76 6.32 22.41 0.14 -6.62 15 8 Cl -0.10 -3.39 28.91 -2.72 -0.08 -3.47 15 9 C -0.07 -3.18 9.72 22.23 0.22 -2.96 15 10 C -0.17 -8.57 8.64 22.72 0.20 -8.38 15 11 C 0.11 5.85 5.67 -19.85 -0.11 5.74 15 12 C -0.43 -23.33 7.86 23.38 0.18 -23.15 15 13 H 0.09 5.04 5.96 -2.91 -0.02 5.02 15 14 C 0.03 1.57 5.26 85.40 0.45 2.02 15 15 N -0.80 -39.80 11.05 21.90 0.24 -39.55 15 16 Si 0.99 38.25 29.57 68.60 2.03 40.27 15 17 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 18 H -0.25 -8.94 7.11 99.48 0.71 -8.23 15 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 15 20 H 0.04 1.31 8.10 -2.38 -0.02 1.29 15 21 H 0.04 1.35 8.10 -2.39 -0.02 1.33 15 22 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.11 2.82 8.14 -2.39 -0.02 2.80 15 24 H 0.11 2.79 7.93 -2.39 -0.02 2.77 15 25 H 0.14 4.60 7.02 -2.91 -0.02 4.58 15 26 H 0.12 4.64 8.06 -2.91 -0.02 4.61 15 27 H 0.11 5.77 6.49 -2.91 -0.02 5.75 15 28 H 0.30 13.20 8.29 -92.71 -0.77 12.43 15 Total: -1.00 -58.40 260.65 5.51 -52.89 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.18 Total: 15.13 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 2.18 Total: -39.64 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.24 Total: -39.55 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.27 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.08 Total: -3.47 kcal Total: -58.40 5.51 -52.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.832 kcal (2) G-P(sol) polarization free energy of solvation -58.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds