Wall clock time and date at job start Mon Mar 30 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38230 * 119.88701 * 264.72971 * 10 9 7 12 12 C 1.37997 * 120.23868 * 179.72727 * 11 10 9 13 13 C 1.39682 * 120.00764 * 0.53974 * 12 11 10 14 14 C 1.47738 * 120.10895 * 179.74960 * 13 12 11 15 15 O 1.21473 * 120.00074 * 179.97438 * 14 13 12 16 16 O 1.34717 * 120.00036 * 359.97438 * 14 13 12 17 17 C 1.39482 * 119.77633 * 359.73653 * 13 12 11 18 18 C 1.38731 * 119.76532 * 359.97438 * 17 13 12 19 19 S 1.76207 * 120.00809 * 179.97438 * 18 17 13 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.07998 * 119.88299 * 359.97432 * 11 10 9 24 24 H 1.07992 * 119.99191 * 180.27423 * 12 11 10 25 25 H 0.96700 * 116.99812 * 180.02562 * 16 14 13 26 26 H 1.08007 * 120.11623 * 180.02562 * 17 13 12 27 27 H 1.34503 * 102.99795 * 270.02514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5942 -4.2386 -1.1967 12 6 3.4947 -5.2842 -1.2066 13 6 4.0333 -5.7536 -0.0063 14 6 4.9933 -6.8766 -0.0138 15 8 5.4609 -7.2830 1.0311 16 8 5.3501 -7.4500 -1.1795 17 6 3.6621 -5.1584 1.1992 18 6 2.7607 -4.1038 1.1978 19 16 2.2868 -3.3475 2.7171 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.1754 -3.8804 -2.1255 24 1 3.7796 -5.7425 -2.1420 25 1 5.9807 -8.1816 -1.1339 26 1 4.0756 -5.5167 2.1305 27 1 1.2131 -4.0663 3.0908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307053157.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:02 Heat of formation + Delta-G solvation = -72.102579 kcal Electronic energy + Delta-G solvation = -14027.570280 eV Core-core repulsion = 11455.327829 eV Total energy + Delta-G solvation = -2572.242451 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.26533 -38.49520 -36.06042 -33.65756 -31.63756 -30.79348 -27.78402 -24.45242 -22.78914 -22.07923 -20.50967 -18.34276 -17.55640 -16.57188 -16.27095 -15.56095 -15.09957 -14.99898 -14.38216 -14.14795 -13.41186 -13.10364 -12.75434 -12.08142 -11.67657 -11.62023 -11.45498 -11.08693 -10.71949 -10.61902 -10.52836 -10.22650 -9.74241 -9.55483 -8.64188 -8.44286 -8.28236 -7.30635 -6.06402 -4.08409 0.96348 1.36763 2.18448 2.69214 3.07007 3.31036 3.37233 3.39142 3.44044 4.06626 4.45864 5.06768 5.17480 5.27176 5.33389 5.57070 5.70415 6.02322 6.18697 6.37395 6.44949 6.63893 6.68173 7.09521 7.41731 7.58185 7.87924 7.91856 8.21967 8.92887 9.54288 11.04463 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.006581 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.808042 B = 4253.863080 C = 4585.280012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.050 3.950 11 C -0.148 4.148 12 C -0.037 4.037 13 C -0.173 4.173 14 C 0.534 3.466 15 O -0.524 6.524 16 O -0.514 6.514 17 C -0.005 4.005 18 C -0.131 4.131 19 S -0.096 6.096 20 H 0.261 0.739 21 H 0.047 0.953 22 H 0.032 0.968 23 H 0.136 0.864 24 H 0.134 0.866 25 H 0.410 0.590 26 H 0.140 0.860 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.089 -11.084 -1.637 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.001 3.999 10 C 0.047 3.953 11 C -0.167 4.167 12 C -0.055 4.055 13 C -0.176 4.176 14 C 0.379 3.621 15 O -0.414 6.414 16 O -0.326 6.326 17 C -0.026 4.026 18 C -0.243 4.243 19 S 0.062 5.938 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.154 0.846 24 H 0.152 0.848 25 H 0.268 0.732 26 H 0.158 0.842 27 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 5.699 -10.197 -0.580 11.696 hybrid contribution 0.343 -0.605 -0.667 0.964 sum 6.042 -10.802 -1.247 12.440 Atomic orbital electron populations 1.69949 1.06015 1.26752 1.50538 1.24912 0.94839 0.99094 0.95042 0.86465 0.80195 0.83422 0.77562 1.19608 1.21114 1.20849 1.20807 0.92855 0.88872 1.50905 0.92355 1.18692 0.92571 0.89286 0.99337 1.21513 0.91278 0.91655 0.90841 1.21186 0.99806 0.97028 0.98717 1.21531 0.92882 0.94150 0.96955 1.18777 1.03978 0.99710 0.95133 1.20946 0.79187 0.81309 0.80617 1.90860 1.54120 1.63077 1.33391 1.84579 1.61896 1.50372 1.35718 1.21642 0.92348 0.91412 0.97209 1.21094 1.05049 1.01551 0.96627 1.86065 1.38596 1.47413 1.21736 0.92884 0.93462 0.94947 0.84610 0.84774 0.73232 0.84248 0.97854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.50 -13.14 9.07 -34.44 -0.31 -13.45 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.04 0.91 4.56 -29.03 -0.13 0.78 15 10 C 0.05 1.01 5.09 -104.32 -0.53 0.48 15 11 C -0.15 -2.53 9.65 -39.67 -0.38 -2.92 15 12 C -0.04 -0.55 9.61 -39.13 -0.38 -0.92 15 13 C -0.17 -2.71 5.87 -105.01 -0.62 -3.33 15 14 C 0.53 7.64 8.27 34.61 0.29 7.93 15 15 O -0.52 -8.72 17.13 -19.24 -0.33 -9.04 15 16 O -0.51 -5.43 12.68 -40.54 -0.51 -5.95 15 17 C -0.01 -0.09 9.34 -38.94 -0.36 -0.45 15 18 C -0.13 -2.51 6.10 -39.10 -0.24 -2.75 15 19 S -0.10 -1.84 24.04 -107.50 -2.58 -4.42 15 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.05 1.20 7.00 -51.93 -0.36 0.84 15 22 H 0.03 0.81 8.05 -51.93 -0.42 0.39 15 23 H 0.14 2.15 8.06 -52.49 -0.42 1.72 15 24 H 0.13 1.62 7.60 -52.49 -0.40 1.22 15 25 H 0.41 2.32 9.11 45.56 0.42 2.73 15 26 H 0.14 2.23 7.65 -52.48 -0.40 1.83 15 27 H 0.06 1.00 9.07 97.61 0.89 1.89 15 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -30.20 263.61 -6.75 -36.95 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -0.24 Total: 0.10 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.76 Total: -13.03 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.74 Total: -24.65 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.84 Total: -14.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.58 Total: -4.42 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.20 -6.75 -36.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307053157.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.150 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds