Wall clock time and date at job start Mon Mar 30 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38230 * 119.88701 * 264.72971 * 10 9 7 12 12 C 1.37997 * 120.23868 * 179.72727 * 11 10 9 13 13 C 1.39682 * 120.00764 * 0.53974 * 12 11 10 14 14 C 1.47738 * 120.10895 * 179.74960 * 13 12 11 15 15 O 1.21473 * 120.00074 * 179.97438 * 14 13 12 16 16 O 1.34717 * 120.00036 * 359.97438 * 14 13 12 17 17 C 1.39482 * 119.77633 * 359.73653 * 13 12 11 18 18 C 1.38731 * 119.76532 * 359.97438 * 17 13 12 19 19 S 1.76207 * 120.00809 * 179.97438 * 18 17 13 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.07998 * 119.88299 * 359.97432 * 11 10 9 24 24 H 1.07992 * 119.99191 * 180.27423 * 12 11 10 25 25 H 0.96700 * 116.99812 * 180.02562 * 16 14 13 26 26 H 1.08007 * 120.11623 * 180.02562 * 17 13 12 27 27 H 1.34503 * 102.99795 * 270.02514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5942 -4.2386 -1.1967 12 6 3.4947 -5.2842 -1.2066 13 6 4.0333 -5.7536 -0.0063 14 6 4.9933 -6.8766 -0.0138 15 8 5.4609 -7.2830 1.0311 16 8 5.3501 -7.4500 -1.1795 17 6 3.6621 -5.1584 1.1992 18 6 2.7607 -4.1038 1.1978 19 16 2.2868 -3.3475 2.7171 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.1754 -3.8804 -2.1255 24 1 3.7796 -5.7425 -2.1420 25 1 5.9807 -8.1816 -1.1339 26 1 4.0756 -5.5167 2.1305 27 1 1.2131 -4.0663 3.0908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307053157.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:01 Heat of formation + Delta-G solvation = -90.838534 kcal Electronic energy + Delta-G solvation = -14028.382732 eV Core-core repulsion = 11455.327829 eV Total energy + Delta-G solvation = -2573.054903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.41374 -39.80885 -37.07951 -35.49418 -33.35036 -32.12908 -29.49433 -26.10920 -24.17278 -23.54984 -21.88324 -19.54146 -18.74804 -18.40594 -17.81386 -16.77333 -16.64431 -16.39745 -15.92119 -15.57929 -14.76358 -14.46820 -14.31776 -13.66594 -13.40662 -13.23827 -12.72951 -12.57736 -12.45289 -12.33454 -11.84628 -11.72244 -11.51908 -11.44412 -10.51989 -9.98327 -9.78631 -8.84753 -8.13082 -6.20931 -0.34909 0.02280 0.74319 1.43630 1.44856 1.48719 1.58742 1.88968 2.10239 2.46372 2.74382 3.21869 3.81819 3.98740 4.04895 4.17701 4.36983 4.69929 4.86277 5.09743 5.12334 5.27008 5.40071 5.56442 5.73129 5.78873 5.80701 6.21411 6.86983 6.98703 7.45155 8.97938 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.006581 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.808042 B = 4253.863080 C = 4585.280012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.501 4.501 8 H 0.052 0.948 9 C 0.048 3.952 10 C 0.019 3.981 11 C -0.148 4.148 12 C -0.016 4.016 13 C -0.169 4.169 14 C 0.545 3.455 15 O -0.549 6.549 16 O -0.499 6.499 17 C -0.007 4.007 18 C -0.139 4.139 19 S -0.125 6.125 20 H 0.263 0.737 21 H 0.024 0.976 22 H 0.015 0.985 23 H 0.147 0.853 24 H 0.173 0.827 25 H 0.435 0.565 26 H 0.147 0.853 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -12.273 -2.821 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.011 3.989 10 C 0.017 3.983 11 C -0.168 4.168 12 C -0.034 4.034 13 C -0.172 4.172 14 C 0.391 3.609 15 O -0.441 6.441 16 O -0.312 6.312 17 C -0.028 4.028 18 C -0.251 4.251 19 S 0.033 5.967 20 H 0.072 0.928 21 H 0.042 0.958 22 H 0.033 0.967 23 H 0.165 0.835 24 H 0.190 0.810 25 H 0.297 0.703 26 H 0.165 0.835 27 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.432 -11.414 -1.784 13.736 hybrid contribution -0.139 -0.389 -0.354 0.544 sum 7.293 -11.803 -2.138 14.038 Atomic orbital electron populations 1.70054 1.07391 1.27547 1.51866 1.25681 0.95566 1.02361 0.94928 0.85534 0.79117 0.79622 0.77619 1.19089 1.20403 1.20744 1.21054 0.92654 0.90292 1.49931 0.92996 1.18381 0.92901 0.90394 0.97266 1.21214 0.92339 0.92065 0.92713 1.21311 1.00146 0.97416 0.97911 1.21818 0.90865 0.92529 0.98148 1.19020 1.03593 0.99727 0.94837 1.20549 0.78494 0.80768 0.81070 1.90870 1.54923 1.63742 1.34602 1.84504 1.62310 1.51091 1.33335 1.21683 0.91846 0.90856 0.98399 1.21072 1.05915 1.02425 0.95659 1.86042 1.39350 1.48748 1.22542 0.92814 0.95804 0.96710 0.83546 0.80964 0.70290 0.83547 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 13.29 21.45 0.28 -53.53 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 7 C -0.50 -26.97 9.07 25.60 0.23 -26.74 15 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 9 C 0.05 2.36 4.56 29.10 0.13 2.49 15 10 C 0.02 0.78 5.09 -19.67 -0.10 0.68 15 11 C -0.15 -4.84 9.65 22.21 0.21 -4.62 15 12 C -0.02 -0.41 9.61 22.56 0.22 -0.20 15 13 C -0.17 -4.80 5.87 -20.12 -0.12 -4.92 15 14 C 0.55 13.65 8.27 70.33 0.58 14.23 15 15 O -0.55 -16.74 17.13 19.92 0.34 -16.40 15 16 O -0.50 -8.14 12.68 -56.27 -0.71 -8.85 15 17 C -0.01 -0.22 9.34 22.69 0.21 -0.01 15 18 C -0.14 -5.28 6.10 22.58 0.14 -5.14 15 19 S -0.12 -4.85 24.04 -56.49 -1.36 -6.21 15 20 H 0.26 14.42 8.31 -92.71 -0.77 13.65 15 21 H 0.02 1.27 7.00 -2.39 -0.02 1.25 15 22 H 0.01 0.76 8.05 -2.39 -0.02 0.74 15 23 H 0.15 4.39 8.06 -2.91 -0.02 4.37 15 24 H 0.17 3.23 7.60 -2.91 -0.02 3.21 15 25 H 0.43 2.81 9.11 -74.06 -0.67 2.13 15 26 H 0.15 4.52 7.65 -2.91 -0.02 4.50 15 27 H 0.07 2.53 9.07 73.35 0.67 3.20 15 Total: -1.00 -65.13 263.61 3.77 -61.36 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.21 Total: 1.20 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 1.97 Total: -23.06 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.28 Total: -53.53 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.37 Total: -25.25 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -1.36 Total: -6.21 kcal Total: -65.13 3.77 -61.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307053157.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.475 kcal (2) G-P(sol) polarization free energy of solvation -65.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds