Wall clock time and date at job start Mon Mar 30 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47628 * 2 1 4 4 Cl 1.80303 * 109.47111 * 119.99711 * 2 1 3 5 5 C 1.50696 * 109.47058 * 239.99638 * 2 1 3 6 6 O 1.21251 * 119.99977 * 103.13451 * 5 2 1 7 7 C 1.47219 * 120.00024 * 283.12930 * 5 2 1 8 8 C 1.40176 * 120.05299 * 186.67948 * 7 5 2 9 9 C 1.38252 * 120.32872 * 180.02562 * 8 7 5 10 10 C 1.37798 * 120.44772 * 0.25307 * 9 8 7 11 11 C 1.40767 * 120.09343 * 359.45746 * 10 9 8 12 12 C 1.41453 * 120.16732 * 180.27204 * 11 10 9 13 13 H 1.07994 * 119.99891 * 206.56062 * 12 11 10 14 14 C 1.39931 * 119.99802 * 26.55920 * 12 11 10 15 15 N 1.30835 * 119.99867 * 12.54192 * 14 12 11 16 16 Si 1.86798 * 120.00185 * 192.54093 * 14 12 11 17 17 H 1.48503 * 109.46774 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47108 * 119.99900 * 16 14 12 19 19 H 1.48496 * 109.47462 * 239.99888 * 16 14 12 20 20 C 1.39287 * 120.05195 * 6.70878 * 7 5 2 21 21 H 1.09000 * 109.47333 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46622 * 300.00347 * 1 2 3 23 23 H 1.08996 * 109.47232 * 59.99776 * 1 2 3 24 24 H 1.07997 * 119.83662 * 0.02562 * 8 7 5 25 25 H 1.08007 * 119.77929 * 179.97438 * 9 8 7 26 26 H 1.07999 * 119.95525 * 179.72391 * 10 9 8 27 27 H 0.97008 * 119.99577 * 179.97438 * 15 14 12 28 28 H 1.07999 * 120.22231 * 359.94821 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 17 2.1310 -0.8499 1.4722 5 6 2.0323 -0.7105 -1.2304 6 8 2.4593 -0.0710 -2.1679 7 6 2.0046 -2.1810 -1.2941 8 6 2.5979 -2.8481 -2.3748 9 6 2.5747 -4.2289 -2.4407 10 6 1.9644 -4.9652 -1.4486 11 6 1.3683 -4.3144 -0.3520 12 6 0.7463 -5.0689 0.6702 13 1 -0.0497 -4.6325 1.2552 14 6 1.1625 -6.3807 0.9232 15 7 2.2735 -6.8277 0.3963 16 14 0.1318 -7.4938 2.0133 17 1 -1.0684 -6.7549 2.4810 18 1 -0.2930 -8.6883 1.2402 19 1 0.9371 -7.9230 3.1847 20 6 1.3883 -2.9116 -0.2810 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.0754 -2.2807 -3.1599 25 1 3.0343 -4.7338 -3.2776 26 1 1.9471 -6.0433 -1.5103 27 1 2.5621 -7.7370 0.5721 28 1 0.9299 -2.4031 0.5543 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307053907.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:42 Heat of formation + Delta-G solvation = -49.452242 kcal Electronic energy + Delta-G solvation = -14434.068435 eV Core-core repulsion = 11860.764469 eV Total energy + Delta-G solvation = -2573.303965 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88961 -38.83044 -37.21816 -35.48838 -33.77668 -31.76763 -31.27534 -27.19504 -26.22869 -23.61619 -22.60505 -20.86680 -18.96635 -17.64803 -17.05963 -16.64777 -16.31731 -15.96076 -15.56566 -14.94667 -14.67196 -14.10980 -13.81477 -13.45712 -13.29139 -13.01914 -12.84773 -12.71976 -12.48097 -12.19843 -12.06648 -11.93407 -11.54420 -11.10589 -11.04680 -10.42383 -9.43614 -9.39483 -8.58865 -6.34905 -0.06992 0.95298 1.01919 1.42263 1.48016 1.56499 1.80474 2.23649 2.77030 2.85108 3.65588 3.74412 3.81957 4.29507 4.43362 4.57240 4.67941 4.72970 4.98984 5.03091 5.13707 5.19374 5.35824 5.54243 5.77709 6.00964 6.05168 6.19323 6.42126 6.63803 6.93395 6.95918 8.37712 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.008504 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.580099 B = 3291.845975 C = 3952.230687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 H 0.145 0.855 4 Cl -0.155 7.155 5 C 0.407 3.593 6 O -0.482 6.482 7 C -0.167 4.167 8 C -0.182 4.182 9 C -0.125 4.125 10 C -0.152 4.152 11 C 0.061 3.939 12 C -0.489 4.489 13 H 0.082 0.918 14 C 0.032 3.968 15 N -0.835 5.835 16 Si 0.981 3.019 17 H -0.255 1.255 18 H -0.267 1.267 19 H -0.270 1.270 20 C -0.156 4.156 21 H 0.067 0.933 22 H 0.105 0.895 23 H 0.090 0.910 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.286 0.714 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 7.215 2.120 8.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 H 0.163 0.837 4 Cl -0.129 7.129 5 C 0.288 3.712 6 O -0.361 6.361 7 C -0.168 4.168 8 C -0.201 4.201 9 C -0.143 4.143 10 C -0.172 4.172 11 C 0.059 3.941 12 C -0.519 4.519 13 H 0.100 0.900 14 C -0.181 4.181 15 N -0.462 5.462 16 Si 0.803 3.197 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.195 1.195 20 C -0.176 4.176 21 H 0.086 0.914 22 H 0.124 0.876 23 H 0.109 0.891 24 H 0.126 0.874 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.533 7.289 1.749 8.287 hybrid contribution 0.103 -0.895 0.360 0.970 sum -3.430 6.394 2.109 7.556 Atomic orbital electron populations 1.22167 0.88471 1.04747 1.05629 1.24706 1.00586 0.99110 0.84242 0.83691 1.98752 1.90006 1.81087 1.43036 1.22807 0.72338 0.89168 0.86898 1.90459 1.37096 1.69491 1.39019 1.20036 1.05307 0.93298 0.98121 1.20838 1.05971 0.94185 0.99123 1.20906 1.00681 0.93741 0.98977 1.21693 1.01796 0.99882 0.93812 1.17990 0.91643 0.92143 0.92296 1.19831 1.18015 0.97997 1.16015 0.90008 1.26716 0.95019 0.99447 0.96934 1.69845 1.19421 1.18091 1.38802 0.85157 0.79001 0.77758 0.77828 1.17800 1.19183 1.19542 1.22098 1.03445 0.93711 0.98305 0.91364 0.87610 0.89095 0.87386 0.86613 0.87098 0.90295 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.12 71.98 0.66 -2.86 15 2 C -0.04 -1.19 3.49 29.85 0.10 -1.08 15 3 H 0.15 3.30 8.14 -2.39 -0.02 3.28 15 4 Cl -0.16 -5.00 24.90 -2.72 -0.07 -5.07 15 5 C 0.41 15.14 6.16 28.05 0.17 15.32 15 6 O -0.48 -19.44 17.10 -2.94 -0.05 -19.49 15 7 C -0.17 -7.26 5.70 -20.19 -0.12 -7.37 15 8 C -0.18 -8.20 9.60 22.74 0.22 -7.98 15 9 C -0.12 -5.78 10.00 22.17 0.22 -5.56 15 10 C -0.15 -7.80 8.67 22.78 0.20 -7.60 15 11 C 0.06 3.16 5.57 -21.33 -0.12 3.04 15 12 C -0.49 -25.02 9.07 23.47 0.21 -24.81 15 13 H 0.08 3.98 7.88 -2.91 -0.02 3.96 15 14 C 0.03 1.57 5.23 85.25 0.45 2.02 15 15 N -0.83 -42.69 10.78 21.82 0.24 -42.45 15 16 Si 0.98 37.07 29.58 68.60 2.03 39.10 15 17 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15 18 H -0.27 -9.76 7.11 99.48 0.71 -9.05 15 19 H -0.27 -9.95 7.11 99.48 0.71 -9.25 15 20 C -0.16 -7.11 7.45 23.07 0.17 -6.94 15 21 H 0.07 1.83 6.35 -2.39 -0.02 1.82 15 22 H 0.11 1.84 8.14 -2.38 -0.02 1.82 15 23 H 0.09 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.11 4.60 7.65 -2.91 -0.02 4.58 15 25 H 0.12 4.71 8.06 -2.91 -0.02 4.69 15 26 H 0.11 5.93 6.10 -2.91 -0.02 5.91 15 27 H 0.29 13.29 8.30 -92.70 -0.77 12.53 15 28 H 0.14 5.60 4.11 -2.91 -0.01 5.59 15 Total: -1.00 -58.12 256.59 5.49 -52.63 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.18 Total: 19.11 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 2.17 Total: -43.82 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.24 Total: -42.45 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 17 Polarization: -5.00 SS G_CDS: -0.07 Total: -5.07 kcal Total: -58.12 5.49 -52.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307053907.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.174 kcal (2) G-P(sol) polarization free energy of solvation -58.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds