Wall clock time and date at job start Mon Mar 30 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20759 * 120.00137 * 2 1 4 4 C 1.50695 * 119.99987 * 179.97438 * 2 1 3 5 5 C 1.50707 * 109.47306 * 179.97438 * 4 2 1 6 6 C 1.37620 * 119.94325 * 99.72510 * 5 4 2 7 7 C 1.40742 * 119.63350 * 179.77696 * 6 5 4 8 8 C 1.41349 * 120.22719 * 180.27445 * 7 6 5 9 9 H 1.08004 * 119.99761 * 154.93097 * 8 7 6 10 10 C 1.39927 * 120.00397 * 334.92810 * 8 7 6 11 11 N 1.30836 * 119.99718 * 342.85274 * 10 8 7 12 12 Si 1.86801 * 120.00138 * 162.84418 * 10 8 7 13 13 H 1.48496 * 109.46983 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46926 * 120.00326 * 12 10 8 15 15 H 1.48499 * 109.47176 * 240.00606 * 12 10 8 16 16 C 1.40751 * 119.54124 * 0.50180 * 7 6 5 17 17 C 1.36551 * 119.88194 * 359.75051 * 16 7 6 18 18 C 1.38787 * 119.94854 * 280.00770 * 5 4 2 19 19 Cl 1.73602 * 119.76742 * 359.97438 * 18 5 4 20 20 H 1.09004 * 109.47124 * 239.99739 * 1 2 3 21 21 H 1.09004 * 109.47309 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47306 * 119.99884 * 1 2 3 23 23 H 1.08998 * 109.47829 * 299.99864 * 4 2 1 24 24 H 1.09004 * 109.47047 * 60.00580 * 4 2 1 25 25 H 1.07996 * 120.18033 * 0.02562 * 6 5 4 26 26 H 0.97001 * 119.99839 * 179.97438 * 11 10 8 27 27 H 1.07993 * 120.05489 * 179.72892 * 16 7 6 28 28 H 1.07994 * 119.81357 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7421 -1.0297 -0.0002 6 6 4.4548 -1.1015 1.1750 7 6 5.8391 -0.8477 1.1660 8 6 6.5843 -0.9236 2.3647 9 1 7.6432 -1.1335 2.3299 10 6 5.9502 -0.7269 3.5964 11 7 4.7755 -0.1525 3.6431 12 14 6.7806 -1.2844 5.1741 13 1 8.0929 -1.9001 4.8518 14 1 6.9887 -0.1140 6.0642 15 1 5.9207 -2.2816 5.8604 16 6 6.4754 -0.5131 -0.0441 17 6 5.7487 -0.4423 -1.1980 18 6 4.3847 -0.6985 -1.1849 19 17 3.4759 -0.6039 -2.6610 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8899 23 1 1.9972 -1.8763 0.8908 24 1 1.9972 -1.8770 -0.8892 25 1 3.9552 -1.3551 2.0982 26 1 4.3358 -0.0165 4.4969 27 1 7.5364 -0.3125 -0.0598 28 1 6.2380 -0.1851 -2.1257 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307055539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:15 Heat of formation + Delta-G solvation = -42.094652 kcal Electronic energy + Delta-G solvation = -14435.792846 eV Core-core repulsion = 11862.807930 eV Total energy + Delta-G solvation = -2572.984916 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01300 -37.45925 -35.33618 -33.69927 -32.04466 -29.90119 -29.46388 -26.27549 -25.18721 -21.18294 -20.47416 -18.92822 -17.19758 -15.61354 -15.23226 -15.09598 -14.85961 -14.48281 -13.75438 -13.48218 -12.75919 -12.33894 -12.00005 -11.86275 -11.77796 -11.62298 -11.28997 -11.16230 -11.11166 -10.69124 -10.35722 -10.04093 -9.80636 -9.50001 -9.23948 -9.00607 -7.52445 -7.34611 -6.85036 -4.45318 2.58537 2.61455 2.86352 3.02839 3.06788 3.09778 3.47089 3.86374 4.40710 4.75671 5.37244 5.53126 5.56132 5.57973 5.83184 5.87984 6.12295 6.26440 6.37548 6.71510 6.93264 7.05438 7.14958 7.43810 7.55230 7.78296 7.89548 8.11139 8.17066 8.47106 8.76565 8.80201 10.08509 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027856 B = 0.008529 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.942068 B = 3281.963118 C = 4061.130665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.351 3.649 3 O -0.435 6.435 4 C -0.125 4.125 5 C -0.051 4.051 6 C -0.147 4.147 7 C 0.112 3.888 8 C -0.456 4.456 9 H 0.081 0.919 10 C 0.075 3.925 11 N -0.786 5.786 12 Si 0.910 3.090 13 H -0.259 1.259 14 H -0.274 1.274 15 H -0.271 1.271 16 C -0.215 4.215 17 C -0.079 4.079 18 C -0.135 4.135 19 Cl -0.135 7.135 20 H 0.086 0.914 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.282 0.718 27 H 0.100 0.900 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 -3.272 -2.692 7.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.224 3.776 3 O -0.306 6.306 4 C -0.162 4.162 5 C -0.052 4.052 6 C -0.167 4.167 7 C 0.109 3.891 8 C -0.485 4.485 9 H 0.099 0.901 10 C -0.144 4.144 11 N -0.410 5.410 12 Si 0.734 3.266 13 H -0.183 1.183 14 H -0.199 1.199 15 H -0.196 1.196 16 C -0.234 4.234 17 C -0.098 4.098 18 C -0.162 4.162 19 Cl -0.107 7.107 20 H 0.105 0.895 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.143 0.857 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.762 -2.600 -2.641 6.851 hybrid contribution 0.138 -0.197 0.626 0.671 sum -5.624 -2.797 -2.015 6.596 Atomic orbital electron populations 1.22317 0.95544 1.04213 1.03841 1.24435 0.90989 0.90732 0.71441 1.90436 1.71766 1.34724 1.33715 1.21032 0.94078 0.97318 1.03788 1.18869 0.92606 1.01179 0.92549 1.21113 0.94920 1.05396 0.95238 1.17645 0.92040 0.87170 0.92244 1.19637 0.96655 1.42169 0.90036 0.90076 1.25960 0.94694 0.92354 1.01400 1.69850 1.14150 1.28752 1.28273 0.86236 0.80525 0.79277 0.80594 1.18293 1.19908 1.19614 1.20692 0.98745 1.10992 0.92998 1.20107 0.91826 1.00248 0.97577 1.19984 0.91617 1.20045 0.84564 1.98201 1.76317 1.97816 1.38369 0.89516 0.90587 0.89624 0.88646 0.88681 0.85744 0.90732 0.88167 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 10.26 36.00 0.37 -2.19 15 2 C 0.35 6.40 7.02 -29.04 -0.20 6.20 15 3 O -0.44 -10.05 16.68 6.00 0.10 -9.95 15 4 C -0.12 -2.28 5.22 -29.03 -0.15 -2.43 15 5 C -0.05 -1.17 4.42 -104.64 -0.46 -1.64 15 6 C -0.15 -3.73 8.31 -38.86 -0.32 -4.05 15 7 C 0.11 2.93 5.57 -106.82 -0.59 2.34 15 8 C -0.46 -11.79 9.05 -37.77 -0.34 -12.13 15 9 H 0.08 2.01 7.90 -52.48 -0.41 1.59 15 10 C 0.07 1.82 5.15 -17.34 -0.09 1.74 15 11 N -0.79 -19.96 10.95 55.55 0.61 -19.35 15 12 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 15 13 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 14 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 16 C -0.21 -5.25 9.74 -39.24 -0.38 -5.63 15 17 C -0.08 -1.82 9.75 -39.98 -0.39 -2.21 15 18 C -0.14 -3.10 6.22 -39.17 -0.24 -3.34 15 19 Cl -0.13 -2.66 27.29 -51.86 -1.41 -4.08 15 20 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.08 0.96 8.12 -51.93 -0.42 0.54 15 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.10 1.55 8.00 -51.93 -0.42 1.14 15 24 H 0.10 1.54 7.34 -51.93 -0.38 1.16 15 25 H 0.12 3.20 6.16 -52.49 -0.32 2.88 15 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 27 H 0.10 2.28 8.06 -52.49 -0.42 1.85 15 28 H 0.10 2.03 8.06 -52.49 -0.42 1.60 15 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -29.04 264.77 -7.34 -36.38 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -2.78 Total: 3.28 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.81 Total: -23.35 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.61 Total: -19.35 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.10 Total: -9.95 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -1.41 Total: -4.08 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.04 -7.34 -36.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307055539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.711 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds