Wall clock time and date at job start Mon Mar 30 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20759 * 120.00137 * 2 1 4 4 C 1.50695 * 119.99987 * 179.97438 * 2 1 3 5 5 C 1.50707 * 109.47306 * 179.97438 * 4 2 1 6 6 C 1.37620 * 119.94325 * 99.72510 * 5 4 2 7 7 C 1.40742 * 119.63350 * 179.77696 * 6 5 4 8 8 C 1.41349 * 120.22719 * 180.27445 * 7 6 5 9 9 H 1.08004 * 119.99761 * 154.93097 * 8 7 6 10 10 C 1.39927 * 120.00397 * 334.92810 * 8 7 6 11 11 N 1.30836 * 119.99718 * 342.85274 * 10 8 7 12 12 Si 1.86801 * 120.00138 * 162.84418 * 10 8 7 13 13 H 1.48496 * 109.46983 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46926 * 120.00326 * 12 10 8 15 15 H 1.48499 * 109.47176 * 240.00606 * 12 10 8 16 16 C 1.40751 * 119.54124 * 0.50180 * 7 6 5 17 17 C 1.36551 * 119.88194 * 359.75051 * 16 7 6 18 18 C 1.38787 * 119.94854 * 280.00770 * 5 4 2 19 19 Cl 1.73602 * 119.76742 * 359.97438 * 18 5 4 20 20 H 1.09004 * 109.47124 * 239.99739 * 1 2 3 21 21 H 1.09004 * 109.47309 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47306 * 119.99884 * 1 2 3 23 23 H 1.08998 * 109.47829 * 299.99864 * 4 2 1 24 24 H 1.09004 * 109.47047 * 60.00580 * 4 2 1 25 25 H 1.07996 * 120.18033 * 0.02562 * 6 5 4 26 26 H 0.97001 * 119.99839 * 179.97438 * 11 10 8 27 27 H 1.07993 * 120.05489 * 179.72892 * 16 7 6 28 28 H 1.07994 * 119.81357 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7421 -1.0297 -0.0002 6 6 4.4548 -1.1015 1.1750 7 6 5.8391 -0.8477 1.1660 8 6 6.5843 -0.9236 2.3647 9 1 7.6432 -1.1335 2.3299 10 6 5.9502 -0.7269 3.5964 11 7 4.7755 -0.1525 3.6431 12 14 6.7806 -1.2844 5.1741 13 1 8.0929 -1.9001 4.8518 14 1 6.9887 -0.1140 6.0642 15 1 5.9207 -2.2816 5.8604 16 6 6.4754 -0.5131 -0.0441 17 6 5.7487 -0.4423 -1.1980 18 6 4.3847 -0.6985 -1.1849 19 17 3.4759 -0.6039 -2.6610 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8899 23 1 1.9972 -1.8763 0.8908 24 1 1.9972 -1.8770 -0.8892 25 1 3.9552 -1.3551 2.0982 26 1 4.3358 -0.0165 4.4969 27 1 7.5364 -0.3125 -0.0598 28 1 6.2380 -0.1851 -2.1257 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307055539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:14 Heat of formation + Delta-G solvation = -57.684476 kcal Electronic energy + Delta-G solvation = -14436.468872 eV Core-core repulsion = 11862.807930 eV Total energy + Delta-G solvation = -2573.660942 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59501 -39.21045 -37.05675 -35.52612 -33.70726 -31.39069 -31.15904 -27.83999 -27.03747 -23.04026 -22.19384 -20.44277 -19.04135 -17.41658 -16.85227 -16.60263 -16.42990 -16.05194 -15.38219 -15.13111 -14.49906 -13.95502 -13.51562 -13.40557 -13.17278 -13.03331 -12.95053 -12.80310 -12.70902 -12.28463 -12.07367 -11.79747 -11.59198 -11.24428 -11.01469 -10.54489 -9.34987 -9.20948 -8.67636 -6.39195 0.78630 1.00531 1.21349 1.39099 1.46797 1.54733 1.69747 2.19884 2.61534 3.35246 3.69154 3.97969 4.23405 4.35197 4.50601 4.69898 4.75047 4.77242 4.90454 5.06399 5.21187 5.24232 5.31795 5.59984 5.69133 5.90858 6.01160 6.24333 6.56657 6.78743 6.86558 6.90271 8.28479 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027856 B = 0.008529 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.942068 B = 3281.963118 C = 4061.130665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.351 3.649 3 O -0.495 6.495 4 C -0.130 4.130 5 C -0.054 4.054 6 C -0.171 4.171 7 C 0.080 3.920 8 C -0.491 4.491 9 H 0.080 0.920 10 C 0.036 3.964 11 N -0.819 5.819 12 Si 0.986 3.014 13 H -0.257 1.257 14 H -0.268 1.268 15 H -0.260 1.260 16 C -0.233 4.233 17 C -0.085 4.085 18 C -0.145 4.145 19 Cl -0.104 7.104 20 H 0.114 0.886 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.290 0.710 27 H 0.108 0.892 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 -4.064 -2.783 8.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.228 3.772 3 O -0.371 6.371 4 C -0.167 4.167 5 C -0.055 4.055 6 C -0.190 4.190 7 C 0.078 3.922 8 C -0.520 4.520 9 H 0.098 0.902 10 C -0.180 4.180 11 N -0.445 5.445 12 Si 0.806 3.194 13 H -0.181 1.181 14 H -0.193 1.193 15 H -0.185 1.185 16 C -0.253 4.253 17 C -0.103 4.103 18 C -0.172 4.172 19 Cl -0.076 7.076 20 H 0.132 0.868 21 H 0.095 0.905 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.139 0.861 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.118 -3.408 -2.757 8.360 hybrid contribution 0.488 0.047 0.504 0.703 sum -6.631 -3.362 -2.254 7.768 Atomic orbital electron populations 1.22293 0.90634 1.05265 1.06577 1.25137 0.93611 0.89406 0.69018 1.90432 1.73427 1.36363 1.36889 1.21215 0.91100 0.98421 1.05944 1.19315 0.95165 0.99319 0.91741 1.21112 0.94958 1.07148 0.95825 1.18054 0.93023 0.87938 0.93189 1.19892 0.96904 1.44023 0.91158 0.90204 1.26811 0.95196 0.91612 1.04372 1.69904 1.15558 1.29390 1.29609 0.85109 0.79424 0.78922 0.75963 1.18061 1.19318 1.18473 1.20886 0.99411 1.11727 0.93261 1.20406 0.92317 0.99604 0.98020 1.20231 0.91999 1.18986 0.86025 1.98198 1.75519 1.97689 1.36202 0.86790 0.90504 0.86477 0.86701 0.86136 0.86898 0.89954 0.87434 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.17 10.26 71.23 0.73 -3.44 15 2 C 0.35 12.20 7.02 29.10 0.20 12.41 15 3 O -0.50 -22.83 16.68 -1.45 -0.02 -22.86 15 4 C -0.13 -4.51 5.22 29.10 0.15 -4.36 15 5 C -0.05 -2.49 4.42 -19.88 -0.09 -2.58 15 6 C -0.17 -8.88 8.31 22.74 0.19 -8.69 15 7 C 0.08 4.37 5.57 -21.29 -0.12 4.25 15 8 C -0.49 -26.22 9.05 23.44 0.21 -26.01 15 9 H 0.08 4.10 7.90 -2.91 -0.02 4.07 15 10 C 0.04 1.77 5.15 85.25 0.44 2.21 15 11 N -0.82 -42.50 10.95 21.82 0.24 -42.26 15 12 Si 0.99 37.30 29.59 68.60 2.03 39.33 15 13 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 14 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 15 H -0.26 -9.32 7.11 99.48 0.71 -8.62 15 16 C -0.23 -11.72 9.74 22.49 0.22 -11.50 15 17 C -0.08 -3.92 9.75 22.01 0.21 -3.71 15 18 C -0.15 -6.58 6.22 22.53 0.14 -6.44 15 19 Cl -0.10 -3.91 27.29 -2.72 -0.07 -3.98 15 20 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.08 1.71 8.12 -2.38 -0.02 1.69 15 22 H 0.12 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.11 3.53 8.00 -2.39 -0.02 3.51 15 24 H 0.12 3.54 7.34 -2.38 -0.02 3.52 15 25 H 0.11 6.01 6.16 -2.91 -0.02 5.99 15 26 H 0.29 13.49 8.30 -92.71 -0.77 12.72 15 27 H 0.11 5.04 8.06 -2.91 -0.02 5.02 15 28 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 Total: -1.00 -64.69 264.77 5.63 -59.06 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.17 Total: 18.57 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 2.29 Total: -47.85 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.24 Total: -42.26 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.02 Total: -22.86 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 17 Polarization: -3.91 SS G_CDS: -0.07 Total: -3.98 kcal Total: -64.69 5.63 -59.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307055539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.373 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds