Wall clock time and date at job start Mon Mar 30 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20757 * 120.00037 * 2 1 4 4 C 1.50704 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.50699 * 109.46866 * 180.02562 * 4 2 1 6 6 C 1.38679 * 119.79293 * 90.00402 * 5 4 2 7 7 C 1.38550 * 120.52354 * 179.97438 * 6 5 4 8 8 C 1.37853 * 120.10728 * 359.97438 * 7 6 5 9 9 Cl 1.73601 * 120.21093 * 179.97438 * 8 7 6 10 10 C 1.40866 * 119.58311 * 0.02562 * 8 7 6 11 11 C 1.41339 * 120.25620 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99591 * 24.78452 * 11 10 8 13 13 C 1.39935 * 119.99898 * 205.05405 * 11 10 8 14 14 N 1.30831 * 120.00522 * 17.59037 * 13 11 10 15 15 Si 1.86804 * 119.99766 * 197.58386 * 13 11 10 16 16 H 1.48502 * 109.46879 * 60.00326 * 15 13 11 17 17 H 1.48499 * 109.47031 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47296 * 300.00306 * 15 13 11 19 19 C 1.36580 * 119.79377 * 270.26288 * 5 4 2 20 20 H 1.09004 * 109.47500 * 270.00432 * 1 2 3 21 21 H 1.08999 * 109.46956 * 30.00727 * 1 2 3 22 22 H 1.09000 * 109.47336 * 150.00350 * 1 2 3 23 23 H 1.09002 * 109.46669 * 60.00792 * 4 2 1 24 24 H 1.08997 * 109.47412 * 300.00249 * 4 2 1 25 25 H 1.08004 * 119.73913 * 359.95575 * 6 5 4 26 26 H 1.08003 * 119.94588 * 179.97438 * 7 6 5 27 27 H 0.97001 * 120.00405 * 184.58394 * 14 13 11 28 28 H 1.08005 * 120.05342 * 0.04393 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7421 -1.0298 0.0011 6 6 4.4191 -0.9037 1.2048 7 6 5.7812 -0.6510 1.2230 8 6 6.4766 -0.5231 0.0396 9 17 8.1833 -0.2059 0.0592 10 6 5.7934 -0.6504 -1.1857 11 6 6.4922 -0.5213 -2.4075 12 1 7.5524 -0.7235 -2.4471 13 6 5.8115 -0.1261 -3.5645 14 7 4.6400 0.4487 -3.4702 15 14 6.5756 -0.4192 -5.2437 16 1 6.7995 -1.8743 -5.4385 17 1 5.6614 0.0871 -6.2987 18 1 7.8736 0.2971 -5.3288 19 6 4.4087 -0.9007 -1.1839 20 1 -0.3634 0.0001 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5138 23 1 1.9972 -1.8770 -0.8893 24 1 1.9971 -1.8764 0.8908 25 1 3.8802 -1.0029 2.1355 26 1 6.2991 -0.5541 2.1658 27 1 4.1386 0.6623 -4.2726 28 1 3.8748 -0.9951 -2.1180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307057645.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:03 Heat of formation + Delta-G solvation = -57.683042 kcal Electronic energy + Delta-G solvation = -14369.236057 eV Core-core repulsion = 11795.575178 eV Total energy + Delta-G solvation = -2573.660880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57348 -39.19198 -36.82278 -35.70637 -33.39578 -31.57364 -31.04696 -27.73378 -27.04064 -23.08822 -22.06931 -20.37694 -19.03918 -17.39852 -16.72261 -16.52267 -16.33922 -16.08724 -15.44487 -15.07202 -14.40432 -13.92526 -13.76619 -13.30257 -13.18649 -13.03893 -12.88648 -12.73717 -12.59006 -12.19865 -11.91852 -11.81932 -11.57879 -11.08550 -11.04776 -10.47844 -9.39980 -9.08055 -8.64601 -6.36683 0.83804 1.00796 1.23148 1.37190 1.47603 1.52646 1.88793 2.20310 2.65409 3.36667 3.72555 4.05674 4.31706 4.40281 4.55782 4.72145 4.77724 4.85593 4.86763 5.09028 5.24406 5.26427 5.36026 5.58210 5.78666 5.94552 6.12626 6.28350 6.58658 6.82592 6.85488 6.91359 8.29133 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.010436 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.051563 B = 2682.439029 C = 3915.483623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.348 3.652 3 O -0.503 6.503 4 C -0.126 4.126 5 C -0.065 4.065 6 C -0.224 4.224 7 C -0.088 4.088 8 C -0.165 4.165 9 Cl -0.112 7.112 10 C 0.086 3.914 11 C -0.483 4.483 12 H 0.079 0.921 13 C 0.039 3.961 14 N -0.817 5.817 15 Si 0.978 3.022 16 H -0.256 1.256 17 H -0.266 1.266 18 H -0.265 1.265 19 C -0.164 4.164 20 H 0.117 0.883 21 H 0.076 0.924 22 H 0.112 0.888 23 H 0.113 0.887 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.289 0.711 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -4.773 2.986 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.226 3.774 3 O -0.379 6.379 4 C -0.163 4.163 5 C -0.066 4.066 6 C -0.243 4.243 7 C -0.107 4.107 8 C -0.192 4.192 9 Cl -0.083 7.083 10 C 0.083 3.917 11 C -0.511 4.511 12 H 0.097 0.903 13 C -0.177 4.177 14 N -0.442 5.442 15 Si 0.798 3.202 16 H -0.180 1.180 17 H -0.190 1.190 18 H -0.189 1.189 19 C -0.183 4.183 20 H 0.135 0.865 21 H 0.095 0.905 22 H 0.130 0.870 23 H 0.131 0.869 24 H 0.151 0.849 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.099 0.901 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.302 -4.019 2.848 8.808 hybrid contribution 0.762 0.187 -0.730 1.072 sum -6.540 -3.833 2.117 7.870 Atomic orbital electron populations 1.22267 0.90701 1.05651 1.06076 1.25298 0.93599 0.89638 0.68859 1.90463 1.73486 1.36790 1.37153 1.21246 0.90820 0.97836 1.06395 1.19363 0.95366 0.98714 0.93146 1.20529 0.93415 1.13304 0.97069 1.20713 0.94743 0.99720 0.95520 1.21051 0.83563 1.19276 0.95350 1.98176 1.16256 1.95031 1.98875 1.17793 0.92889 0.89164 0.91810 1.19789 0.97064 1.40865 0.93416 0.90328 1.26725 0.95162 0.90976 1.04858 1.69914 1.13601 1.27577 1.33110 0.85320 0.79012 0.80031 0.75818 1.18026 1.18971 1.18903 1.20849 0.94229 1.06238 0.97024 0.86502 0.90535 0.86958 0.86891 0.84910 0.85671 0.86195 0.90052 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 10.25 71.23 0.73 -2.99 15 2 C 0.35 11.28 7.26 29.10 0.21 11.49 15 3 O -0.50 -22.75 16.77 -1.44 -0.02 -22.77 15 4 C -0.13 -3.92 5.74 29.10 0.17 -3.76 15 5 C -0.07 -2.87 4.33 -20.15 -0.09 -2.96 15 6 C -0.22 -9.57 9.70 22.45 0.22 -9.36 15 7 C -0.09 -4.03 9.82 22.25 0.22 -3.81 15 8 C -0.16 -8.44 6.38 22.82 0.15 -8.29 15 9 Cl -0.11 -5.15 27.60 -2.72 -0.08 -5.23 15 10 C 0.09 4.77 5.57 -21.27 -0.12 4.65 15 11 C -0.48 -26.51 8.53 23.44 0.20 -26.32 15 12 H 0.08 4.26 7.12 -2.91 -0.02 4.24 15 13 C 0.04 1.97 5.14 85.25 0.44 2.41 15 14 N -0.82 -43.33 10.96 21.82 0.24 -43.09 15 15 Si 0.98 38.87 29.60 68.60 2.03 40.90 15 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 17 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 19 C -0.16 -8.48 8.27 22.49 0.19 -8.29 15 20 H 0.12 1.69 8.14 -2.38 -0.02 1.67 15 21 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.11 1.51 8.12 -2.39 -0.02 1.49 15 23 H 0.11 3.13 8.08 -2.39 -0.02 3.11 15 24 H 0.13 3.03 8.08 -2.39 -0.02 3.01 15 25 H 0.13 4.44 8.06 -2.91 -0.02 4.42 15 26 H 0.12 4.80 8.06 -2.91 -0.02 4.78 15 27 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 28 H 0.11 5.77 6.17 -2.91 -0.02 5.75 15 Total: -1.00 -67.94 265.52 5.65 -62.29 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.17 Total: 15.12 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 2.31 Total: -47.22 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.24 Total: -43.09 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.02 Total: -22.77 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 17 Polarization: -5.15 SS G_CDS: -0.08 Total: -5.23 kcal Total: -67.94 5.65 -62.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307057645.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.605 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds