Wall clock time and date at job start Mon Mar 30 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31102 * 1 3 3 Si 1.86795 * 120.00092 * 2 1 4 4 H 1.48497 * 109.47295 * 274.05780 * 3 2 1 5 5 H 1.48503 * 109.47047 * 34.05710 * 3 2 1 6 6 H 1.48504 * 109.47006 * 154.05496 * 3 2 1 7 7 C 1.39666 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99914 * 341.31368 * 7 2 1 9 9 C 1.40813 * 119.99979 * 161.31471 * 7 2 1 10 10 C 1.36485 * 123.29915 * 336.33989 * 9 7 2 11 11 S 1.69986 * 111.93154 * 179.97438 * 10 9 7 12 12 C 1.75787 * 93.22114 * 0.02562 * 11 10 9 13 13 C 1.39262 * 110.19061 * 0.25699 * 12 11 10 14 14 C 1.41016 * 119.22809 * 180.30211 * 13 12 11 15 15 O 1.35878 * 119.87830 * 179.76982 * 14 13 12 16 16 C 1.38027 * 120.24985 * 359.48863 * 14 13 12 17 17 C 1.38536 * 120.20888 * 0.25571 * 16 14 13 18 18 C 1.37873 * 120.22035 * 359.97438 * 17 16 14 19 19 F 1.35100 * 119.78093 * 180.02562 * 18 17 16 20 20 H 0.97000 * 120.00102 * 359.97438 * 1 2 3 21 21 H 1.08008 * 124.03527 * 359.97438 * 10 9 7 22 22 H 0.96702 * 113.99511 * 269.72242 * 15 14 13 23 23 H 1.07998 * 119.89756 * 180.23706 * 16 14 13 24 24 H 1.07994 * 119.89059 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 2.4067 2.0959 -1.3965 5 1 1.4880 2.6263 0.7841 6 1 3.5828 1.4168 0.6126 7 6 2.0093 -1.2096 -0.0005 8 1 1.5119 -2.1203 0.2987 9 6 3.3618 -1.2416 -0.3912 10 6 3.9306 -0.3006 -1.1998 11 16 5.5757 -0.6195 -1.4852 12 6 5.5664 -2.0755 -0.5002 13 6 4.2952 -2.2921 0.0254 14 6 4.0743 -3.4113 0.8543 15 8 2.8403 -3.6328 1.3781 16 6 5.1056 -4.2860 1.1310 17 6 6.3665 -4.0672 0.6003 18 6 6.5992 -2.9748 -0.2080 19 9 7.8320 -2.7703 -0.7213 20 1 -0.4850 0.8400 0.0004 21 1 3.3990 0.5457 -1.6093 22 1 2.6986 -3.2179 2.2400 23 1 4.9292 -5.1434 1.7635 24 1 7.1697 -4.7546 0.8205 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307066213.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:22 Heat of formation + Delta-G solvation = -56.495408 kcal Electronic energy + Delta-G solvation = -14281.306164 eV Core-core repulsion = 11586.280186 eV Total energy + Delta-G solvation = -2695.025979 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.42952 -39.21834 -36.09710 -35.01981 -32.78350 -29.47204 -28.28666 -25.92323 -23.07523 -21.97112 -19.95681 -18.28432 -17.21751 -16.74343 -16.16757 -15.43139 -15.11672 -14.98495 -14.35574 -13.94018 -13.25385 -13.08598 -12.72373 -12.22719 -12.13572 -11.56648 -11.26466 -11.07234 -10.86462 -10.32919 -9.96859 -9.68634 -9.66535 -9.27913 -8.45070 -7.81943 -7.03216 -6.93583 -4.50985 1.36045 1.52028 2.47183 2.92138 3.13214 3.20885 3.36907 3.49973 3.96026 3.99534 4.68020 4.75722 5.05186 5.18265 5.37389 5.71923 6.08303 6.22840 6.39468 6.50797 6.70043 6.90183 7.10906 7.29819 7.54235 8.21661 8.26764 8.35239 8.71140 9.97132 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.029089 B = 0.011144 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.328651 B = 2512.041831 C = 3330.578624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.409 4.409 8 H 0.108 0.892 9 C 0.088 3.912 10 C -0.461 4.461 11 S 0.088 5.912 12 C -0.157 4.157 13 C -0.064 4.064 14 C 0.148 3.852 15 O -0.484 6.484 16 C -0.151 4.151 17 C -0.133 4.133 18 C 0.099 3.901 19 F -0.144 7.144 20 H 0.287 0.713 21 H 0.140 0.860 22 H 0.389 0.611 23 H 0.133 0.867 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -3.332 3.108 8.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.165 1.165 7 C -0.440 4.440 8 H 0.126 0.874 9 C 0.079 3.921 10 C -0.596 4.596 11 S 0.352 5.648 12 C -0.274 4.274 13 C -0.075 4.075 14 C 0.102 3.898 15 O -0.294 6.294 16 C -0.174 4.174 17 C -0.155 4.155 18 C 0.073 3.927 19 F -0.123 7.123 20 H 0.097 0.903 21 H 0.158 0.842 22 H 0.245 0.755 23 H 0.151 0.849 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.341 -2.689 1.706 8.929 hybrid contribution -0.756 0.456 1.044 1.367 sum 7.585 -2.233 2.750 8.372 Atomic orbital electron populations 1.69803 1.07959 1.30411 1.34282 1.26158 0.94761 1.01784 0.90835 0.86176 0.81201 0.79501 0.78871 1.19943 1.22225 1.16484 1.19198 0.92109 0.96718 1.35993 0.87447 1.17378 0.93218 0.89033 0.92436 1.23695 0.98657 1.14083 1.23184 1.81860 1.10911 1.19050 1.52940 1.22672 0.96283 1.01976 1.06429 1.19739 0.92204 0.96352 0.99255 1.18287 0.84517 0.91947 0.95080 1.84779 1.29260 1.76022 1.39352 1.20827 0.91515 1.01204 1.03873 1.20570 0.98071 0.97151 0.99674 1.16912 0.78920 0.96762 1.00083 1.91436 1.40207 1.95001 1.85635 0.90307 0.84240 0.75460 0.84892 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.89 13.94 55.54 0.77 -20.11 14 2 C 0.08 2.18 5.46 -17.33 -0.09 2.08 14 3 Si 0.92 20.89 24.56 -169.99 -4.17 16.71 14 4 H -0.27 -6.20 6.67 56.52 0.38 -5.83 14 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 14 6 H -0.24 -5.65 6.75 56.52 0.38 -5.27 14 7 C -0.41 -10.76 9.20 -38.08 -0.35 -11.11 14 8 H 0.11 2.93 6.58 -52.49 -0.35 2.58 14 9 C 0.09 2.23 5.32 -106.20 -0.56 1.66 14 10 C -0.46 -11.37 8.06 30.10 0.24 -11.13 14 11 S 0.09 1.92 22.96 -107.50 -2.47 -0.55 14 12 C -0.16 -3.39 6.42 -38.53 -0.25 -3.63 14 13 C -0.06 -1.46 6.03 -105.10 -0.63 -2.09 14 14 C 0.15 2.90 6.75 -38.61 -0.26 2.64 14 15 O -0.48 -9.03 11.42 -19.36 -0.22 -9.25 14 16 C -0.15 -2.44 9.95 -39.55 -0.39 -2.84 14 17 C -0.13 -2.13 10.00 -39.61 -0.40 -2.52 14 18 C 0.10 1.86 7.32 -39.05 -0.29 1.57 14 19 F -0.14 -2.62 17.26 2.25 0.04 -2.58 14 20 H 0.29 6.79 8.30 -40.82 -0.34 6.45 14 21 H 0.14 3.48 4.42 -52.48 -0.23 3.25 14 22 H 0.39 5.62 9.06 45.56 0.41 6.03 14 23 H 0.13 1.72 8.06 -52.49 -0.42 1.30 14 24 H 0.13 1.67 8.06 -52.49 -0.42 1.25 14 LS Contribution 229.66 15.07 3.46 3.46 Total: -1.00 -28.19 229.66 -5.76 -33.95 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -0.19 Total: 3.72 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.98 Total: -25.36 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.77 Total: -20.11 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.22 Total: -9.25 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.17 Total: 16.71 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.47 Total: -0.55 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.19 -5.76 -33.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307066213.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.545 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds