Wall clock time and date at job start Mon Mar 30 2020 05:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30975 * 1 3 3 Si 1.86809 * 120.00012 * 2 1 4 4 H 1.48501 * 109.47036 * 270.00088 * 3 2 1 5 5 H 1.48499 * 109.47232 * 30.00490 * 3 2 1 6 6 H 1.48509 * 109.46800 * 150.00231 * 3 2 1 7 7 C 1.39788 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00606 * 197.84983 * 7 2 1 9 9 C 1.40821 * 119.99363 * 17.56260 * 7 2 1 10 10 C 1.40544 * 120.03627 * 25.42983 * 9 7 2 11 11 C 1.37608 * 119.95150 * 179.97438 * 10 9 7 12 12 C 1.38581 * 120.65199 * 359.97438 * 11 10 9 13 13 O 1.35602 * 119.61954 * 180.02562 * 12 11 10 14 14 C 1.41953 * 120.76408 * 0.02562 * 12 11 10 15 15 C 1.45422 * 129.09841 * 180.02562 * 14 12 11 16 16 C 1.32212 * 114.80751 * 180.02562 * 15 14 12 17 17 F 1.35099 * 124.37611 * 179.97438 * 16 15 14 18 18 S 1.75302 * 111.24958 * 0.02562 * 16 15 14 19 19 C 1.39147 * 118.96778 * 359.75720 * 14 12 11 20 20 H 0.97000 * 119.99358 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.02234 * 359.97438 * 10 9 7 22 22 H 1.07996 * 119.67832 * 179.97438 * 11 10 9 23 23 H 0.96697 * 114.00101 * 89.99260 * 13 12 11 24 24 H 1.07999 * 122.59372 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.4913 2.0465 -1.4001 5 1 1.4413 2.6527 0.7001 6 1 3.5414 1.4401 0.7000 7 6 2.0088 -1.2106 -0.0005 8 1 3.0498 -1.2332 0.2861 9 6 1.3539 -2.4015 -0.3691 10 6 0.2338 -2.3550 -1.2168 11 6 -0.4045 -3.5199 -1.5762 12 6 0.0459 -4.7450 -1.1108 13 8 -0.5986 -5.8799 -1.4787 14 6 1.1743 -4.8257 -0.2533 15 6 1.7966 -6.0007 0.3356 16 6 2.8456 -5.7487 1.0999 17 9 3.5672 -6.6941 1.7408 18 16 3.1783 -4.0292 1.1754 19 6 1.8286 -3.6531 0.1116 20 1 -0.4849 0.8401 0.0004 21 1 -0.1256 -1.4058 -1.5858 22 1 -1.2651 -3.4791 -2.2275 23 1 -0.2563 -6.2816 -2.2889 24 1 1.4296 -7.0016 0.1628 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307066272.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:54 Heat of formation + Delta-G solvation = -71.841772 kcal Electronic energy + Delta-G solvation = -14007.550915 eV Core-core repulsion = 11311.859468 eV Total energy + Delta-G solvation = -2695.691447 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.03944 -40.30629 -37.61198 -36.47086 -34.52509 -31.29782 -29.42929 -26.94664 -24.35535 -22.98661 -21.93086 -19.84917 -19.21147 -18.01000 -17.10618 -17.04884 -16.89108 -16.69176 -15.89038 -15.37220 -15.12489 -14.39853 -13.94425 -13.82376 -13.55452 -13.14485 -12.82017 -12.60874 -12.28190 -11.94347 -11.65664 -11.56415 -11.12915 -10.94660 -10.09339 -9.21056 -8.82315 -8.61579 -6.40143 -0.12050 0.30761 0.66052 1.17485 1.29869 1.39898 1.52494 1.56898 2.16713 2.55696 3.23244 3.39099 3.79715 4.24256 4.40260 4.51157 4.67169 4.92138 5.13470 5.21316 5.35343 5.45602 5.77309 5.87560 6.03701 6.40588 6.68877 6.70648 7.20789 8.18075 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.009624 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.471712 B = 2908.687014 C = 3901.545224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.041 3.959 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.476 4.476 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.174 4.174 11 C -0.102 4.102 12 C -0.004 4.004 13 O -0.499 6.499 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.010 4.010 17 F -0.107 7.107 18 S 0.088 5.912 19 C -0.231 4.231 20 H 0.296 0.704 21 H 0.121 0.879 22 H 0.127 0.873 23 H 0.384 0.616 24 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -3.055 -1.764 4.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.504 4.504 8 H 0.099 0.901 9 C 0.112 3.888 10 C -0.197 4.197 11 C -0.122 4.122 12 C -0.052 4.052 13 O -0.309 6.309 14 C -0.075 4.075 15 C -0.178 4.178 16 C -0.144 4.144 17 F -0.086 7.086 18 S 0.348 5.652 19 C -0.346 4.346 20 H 0.107 0.893 21 H 0.139 0.861 22 H 0.145 0.855 23 H 0.239 0.761 24 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.397 -2.047 -0.429 3.989 hybrid contribution -0.497 -0.497 -0.897 1.140 sum 2.900 -2.544 -1.327 4.079 Atomic orbital electron populations 1.69894 1.08922 1.31427 1.32688 1.26744 0.95512 1.04499 0.90923 0.85175 0.79066 0.75572 0.79912 1.18150 1.18972 1.18307 1.19715 0.98414 0.92149 1.40151 0.90143 1.17305 0.92107 0.89838 0.89502 1.21051 0.99482 0.97380 1.01774 1.21030 0.99501 0.91738 0.99946 1.17775 0.96088 0.85921 1.05433 1.84718 1.59511 1.38995 1.47641 1.18990 0.96574 0.90875 1.01029 1.21150 0.96128 1.00625 0.99930 1.21488 0.98119 0.91348 1.03403 1.91457 1.76154 1.61274 1.79755 1.83723 1.33082 0.95321 1.53099 1.22520 1.04277 0.97716 1.10135 0.89300 0.86088 0.85543 0.76097 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.76 10.98 21.81 0.24 -38.52 14 2 C 0.04 1.92 5.12 85.20 0.44 2.36 14 3 Si 0.98 35.25 29.60 68.60 2.03 37.28 14 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 5 H -0.27 -9.04 7.11 99.48 0.71 -8.34 14 6 H -0.26 -9.22 7.11 99.48 0.71 -8.52 14 7 C -0.48 -23.91 8.80 23.28 0.20 -23.71 14 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 14 9 C 0.12 6.06 5.59 -21.09 -0.12 5.94 14 10 C -0.17 -8.54 8.65 22.68 0.20 -8.34 14 11 C -0.10 -4.53 9.90 22.20 0.22 -4.31 14 12 C 0.00 -0.18 6.78 23.27 0.16 -0.02 14 13 O -0.50 -18.12 13.37 -89.12 -1.19 -19.31 14 14 C -0.07 -3.03 6.04 -20.29 -0.12 -3.16 14 15 C -0.14 -5.63 10.28 23.09 0.24 -5.40 14 16 C -0.01 -0.40 8.20 66.79 0.55 0.15 14 17 F -0.11 -3.76 17.32 44.97 0.78 -2.98 14 18 S 0.09 3.66 22.81 -56.49 -1.29 2.37 14 19 C -0.23 -11.11 6.35 23.48 0.15 -10.96 14 20 H 0.30 12.72 8.30 -92.71 -0.77 11.95 14 21 H 0.12 6.05 6.17 -2.91 -0.02 6.03 14 22 H 0.13 4.88 8.06 -2.91 -0.02 4.85 14 23 H 0.38 9.92 9.06 -74.06 -0.67 9.25 14 24 H 0.17 5.45 8.06 -2.91 -0.02 5.42 14 Total: -1.00 -55.27 238.51 3.07 -52.20 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.59 Total: 16.40 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 1.91 Total: -47.44 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.24 Total: -38.52 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.19 Total: -19.31 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.29 Total: 2.37 kcal Total: -55.27 3.07 -52.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307066272.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.645 kcal (2) G-P(sol) polarization free energy of solvation -55.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds