Wall clock time and date at job start Mon Mar 30 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20764 * 119.99760 * 2 1 4 4 C 1.50702 * 120.00307 * 180.02562 * 2 1 3 5 5 C 1.50690 * 109.47341 * 179.97438 * 4 2 1 6 6 C 1.37647 * 120.11923 * 264.72466 * 5 4 2 7 7 C 1.38588 * 120.26841 * 179.69670 * 6 5 4 8 8 C 1.38781 * 120.48155 * 0.60491 * 7 6 5 9 9 Cl 1.73601 * 119.88710 * 179.69670 * 8 7 6 10 10 C 1.37711 * 120.22474 * 359.67731 * 8 7 6 11 11 C 1.40704 * 120.11810 * 85.00105 * 5 4 2 12 12 C 1.41401 * 120.23307 * 0.02562 * 11 5 4 13 13 H 1.07994 * 120.00494 * 334.03921 * 12 11 5 14 14 C 1.39954 * 119.99721 * 154.03153 * 12 11 5 15 15 N 1.30823 * 119.99800 * 343.68521 * 14 12 11 16 16 Si 1.86793 * 119.99835 * 163.68189 * 14 12 11 17 17 H 1.48501 * 109.47452 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47249 * 120.00205 * 16 14 12 19 19 H 1.48500 * 109.47295 * 240.00020 * 16 14 12 20 20 H 1.09006 * 109.46897 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46577 * 299.99221 * 1 2 3 22 22 H 1.08996 * 109.47519 * 59.99510 * 1 2 3 23 23 H 1.09003 * 109.46742 * 299.99684 * 4 2 1 24 24 H 1.09004 * 109.47061 * 59.99661 * 4 2 1 25 25 H 1.08007 * 119.86622 * 359.97438 * 6 5 4 26 26 H 1.08000 * 119.76150 * 180.30127 * 7 6 5 27 27 H 1.07991 * 120.13563 * 180.02562 * 10 8 7 28 28 H 0.97000 * 119.99815 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7421 -1.0297 -0.0011 6 6 4.4407 -1.0108 -1.1869 7 6 5.8022 -0.7517 -1.1916 8 6 6.4789 -0.5209 -0.0022 9 17 8.1859 -0.2056 -0.0253 10 6 5.8009 -0.5407 1.1963 11 6 4.4173 -0.7967 1.2111 12 6 3.7106 -0.8200 2.4357 13 1 2.6541 -0.5973 2.4538 14 6 4.3804 -1.1320 3.6243 15 7 5.5556 -1.7053 3.5817 16 14 3.5965 -0.7298 5.2713 17 1 2.2755 -0.0893 5.0476 18 1 3.4139 -1.9802 6.0512 19 1 4.4764 0.1994 6.0246 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.9973 -1.8770 0.8892 24 1 1.9972 -1.8763 -0.8908 25 1 3.9250 -1.1943 -2.1180 26 1 6.3413 -0.7341 -2.1272 27 1 6.3289 -0.3605 2.1210 28 1 6.0196 -1.9219 4.4055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307077771.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:05 Heat of formation + Delta-G solvation = -57.848219 kcal Electronic energy + Delta-G solvation = -14476.208838 eV Core-core repulsion = 11902.540795 eV Total energy + Delta-G solvation = -2573.668042 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.54291 -39.12258 -37.16115 -35.53075 -33.37744 -31.54595 -30.98739 -28.05728 -26.76314 -23.07673 -22.05569 -20.23479 -19.20417 -17.49674 -16.60491 -16.41886 -16.26621 -16.07707 -15.35861 -15.03654 -14.48043 -14.00571 -13.81738 -13.27222 -13.18638 -13.01831 -12.90054 -12.73013 -12.63760 -12.21722 -11.94043 -11.84460 -11.52120 -11.26970 -11.04834 -10.41509 -9.38485 -9.08568 -8.64588 -6.37780 0.80391 0.99338 1.29567 1.37695 1.47676 1.52044 1.53787 2.18241 2.66866 3.39625 3.78081 4.22220 4.40353 4.52333 4.57722 4.66418 4.80677 4.93581 5.00028 5.15020 5.19016 5.29798 5.37613 5.51908 5.83177 5.93001 6.05826 6.25775 6.54176 6.88541 6.90464 6.94613 8.30661 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.012517 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.802393 B = 2236.459751 C = 3774.477956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.351 3.649 3 O -0.504 6.504 4 C -0.110 4.110 5 C -0.191 4.191 6 C -0.079 4.079 7 C -0.239 4.239 8 C -0.018 4.018 9 Cl -0.109 7.109 10 C -0.185 4.185 11 C 0.101 3.899 12 C -0.477 4.477 13 H 0.082 0.918 14 C 0.035 3.965 15 N -0.821 5.821 16 Si 0.975 3.025 17 H -0.255 1.255 18 H -0.261 1.261 19 H -0.272 1.272 20 H 0.108 0.892 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.122 0.878 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -1.261 -3.369 8.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.229 3.771 3 O -0.381 6.381 4 C -0.146 4.146 5 C -0.193 4.193 6 C -0.097 4.097 7 C -0.259 4.259 8 C -0.045 4.045 9 Cl -0.080 7.080 10 C -0.205 4.205 11 C 0.098 3.902 12 C -0.507 4.507 13 H 0.100 0.900 14 C -0.181 4.181 15 N -0.446 5.446 16 Si 0.796 3.204 17 H -0.179 1.179 18 H -0.185 1.185 19 H -0.197 1.197 20 H 0.127 0.873 21 H 0.109 0.891 22 H 0.120 0.880 23 H 0.123 0.877 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.027 -0.800 -3.225 7.773 hybrid contribution 0.547 0.161 0.860 1.032 sum -6.480 -0.639 -2.365 6.927 Atomic orbital electron populations 1.22255 0.91260 1.06437 1.04980 1.25340 0.93351 0.89930 0.68455 1.90388 1.73456 1.36656 1.37570 1.20944 0.91168 0.97306 1.05228 1.19876 0.95994 1.10322 0.93058 1.20726 0.93115 0.98633 0.97254 1.20535 0.95218 1.14723 0.95407 1.20907 0.82724 1.04943 0.95903 1.98239 1.16144 1.94615 1.99044 1.21175 0.95993 1.08118 0.95261 1.17668 0.91071 0.87977 0.93464 1.19718 0.97046 1.42428 0.91460 0.89978 1.26759 0.94932 0.91605 1.04788 1.69875 1.14367 1.28745 1.31661 0.85257 0.79491 0.79127 0.76547 1.17861 1.18529 1.19726 0.87298 0.89125 0.88034 0.87747 0.86049 0.85039 0.86221 0.87628 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.11 10.33 71.24 0.74 -3.37 15 2 C 0.35 11.90 6.90 29.10 0.20 12.11 15 3 O -0.50 -22.53 16.77 -1.46 -0.02 -22.55 15 4 C -0.11 -3.79 5.03 29.10 0.15 -3.64 15 5 C -0.19 -8.69 4.43 -19.40 -0.09 -8.78 15 6 C -0.08 -3.37 9.66 22.21 0.21 -3.15 15 7 C -0.24 -10.70 9.83 22.48 0.22 -10.48 15 8 C -0.02 -0.91 6.31 22.27 0.14 -0.77 15 9 Cl -0.11 -4.66 28.95 -2.72 -0.08 -4.74 15 10 C -0.19 -10.06 8.46 22.75 0.19 -9.87 15 11 C 0.10 5.33 5.56 -21.29 -0.12 5.21 15 12 C -0.48 -24.59 8.14 23.46 0.19 -24.39 15 13 H 0.08 4.01 6.67 -2.91 -0.02 3.99 15 14 C 0.03 1.71 5.16 85.26 0.44 2.15 15 15 N -0.82 -42.65 10.97 21.83 0.24 -42.41 15 16 Si 0.97 37.56 29.59 68.60 2.03 39.59 15 17 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 18 H -0.26 -9.44 7.11 99.48 0.71 -8.74 15 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 20 H 0.11 1.64 8.00 -2.38 -0.02 1.62 15 21 H 0.09 1.90 8.14 -2.39 -0.02 1.89 15 22 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.10 3.59 7.06 -2.39 -0.02 3.57 15 24 H 0.12 3.19 8.05 -2.38 -0.02 3.17 15 25 H 0.13 4.53 8.06 -2.91 -0.02 4.51 15 26 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 27 H 0.11 6.09 6.22 -2.92 -0.02 6.07 15 28 H 0.29 13.61 8.30 -92.71 -0.77 12.84 15 Total: -1.00 -63.84 264.11 5.62 -58.22 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.17 Total: 16.88 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 2.28 Total: -44.99 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.24 Total: -42.41 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.02 Total: -22.55 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -4.66 SS G_CDS: -0.08 Total: -4.74 kcal Total: -63.84 5.62 -58.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307077771.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.373 kcal (2) G-P(sol) polarization free energy of solvation -63.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds