Wall clock time and date at job start Mon Mar 30 2020 05:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48506 * 109.46776 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47013 * 119.99608 * 3 2 1 6 6 H 1.48493 * 109.47275 * 239.99784 * 3 2 1 7 7 C 1.39825 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00159 * 141.05551 * 7 2 1 9 9 C 1.40926 * 120.00111 * 321.05803 * 7 2 1 10 10 C 1.40415 * 120.21654 * 143.53930 * 9 7 2 11 11 C 1.38780 * 120.01421 * 179.69650 * 10 9 7 12 12 S 1.76049 * 130.37447 * 180.24109 * 11 10 9 13 13 C 1.75460 * 91.60839 * 180.29334 * 12 11 10 14 14 C 1.32928 * 110.83973 * 0.02562 * 13 12 11 15 15 O 1.36137 * 122.12493 * 180.02562 * 14 13 12 16 16 C 1.40408 * 120.18597 * 0.56013 * 11 10 9 17 17 C 1.41940 * 119.04993 * 359.73783 * 16 11 10 18 18 C 1.35411 * 120.85436 * 359.97438 * 17 16 11 19 19 F 1.35094 * 119.83551 * 180.02562 * 18 17 16 20 20 H 0.97004 * 119.99979 * 174.23600 * 1 2 3 21 21 H 1.08002 * 119.98948 * 0.02562 * 10 9 7 22 22 H 1.07998 * 124.58486 * 180.02562 * 13 12 11 23 23 H 0.96698 * 113.99842 * 269.97340 * 15 14 13 24 24 H 1.08002 * 119.56953 * 179.97438 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 1.2782 2.7464 -0.0006 5 1 3.0970 1.6964 1.2126 6 1 3.0970 1.6964 -1.2124 7 6 2.0085 -1.2109 0.0005 8 1 2.9084 -1.3151 -0.5873 9 6 1.5387 -2.2954 0.7681 10 6 1.6620 -3.6084 0.2858 11 6 1.2037 -4.6738 1.0480 12 16 1.2239 -6.4032 0.7192 13 6 0.4390 -6.7533 2.2489 14 6 0.1971 -5.6337 2.9235 15 8 -0.4062 -5.6398 4.1439 16 6 0.6054 -4.4425 2.2970 17 6 0.4832 -3.1085 2.7663 18 6 0.9350 -2.0681 2.0267 19 9 0.8087 -0.8067 2.4936 20 1 -0.4850 -0.8358 -0.0844 21 1 2.1183 -3.7895 -0.6761 22 1 0.1865 -7.7444 2.5957 23 1 -1.3704 -5.5768 4.1063 24 1 0.0240 -2.9210 3.7257 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307079895.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:30 Heat of formation + Delta-G solvation = -62.687679 kcal Electronic energy + Delta-G solvation = -14224.559917 eV Core-core repulsion = 11529.265421 eV Total energy + Delta-G solvation = -2695.294496 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.56577 -38.91199 -36.82655 -34.43462 -32.31140 -29.88602 -28.50037 -25.27622 -22.45531 -21.65064 -20.17378 -18.58230 -17.29008 -16.47955 -15.75262 -15.42398 -14.56788 -14.38104 -14.19047 -14.07013 -13.05926 -12.78690 -12.54723 -12.17234 -11.93715 -11.78623 -11.30785 -10.86578 -10.55276 -10.52370 -10.17202 -9.80869 -9.66071 -9.00796 -8.68192 -7.78168 -7.49750 -6.90620 -4.74355 1.53449 2.30706 2.35760 2.72328 2.87443 3.04952 3.18558 3.27765 3.81966 4.15574 4.82806 4.95590 5.36039 5.67416 5.81510 6.30064 6.43826 6.46597 6.65172 6.89556 7.13763 7.21326 7.31944 7.35147 7.64083 7.78378 8.04369 8.27263 8.36982 9.60933 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.042333 B = 0.007989 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.262053 B = 3503.780310 C = 3985.577601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.050 3.950 3 Si 1.061 2.939 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.204 4.204 11 C -0.058 4.058 12 S 0.037 5.963 13 C -0.303 4.303 14 C 0.153 3.847 15 O -0.493 6.493 16 C -0.223 4.223 17 C -0.076 4.076 18 C 0.020 3.980 19 F -0.146 7.146 20 H 0.298 0.702 21 H 0.110 0.890 22 H 0.153 0.847 23 H 0.382 0.618 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -3.894 1.035 4.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.179 4.179 3 Si 0.883 3.117 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.113 0.887 9 C 0.080 3.920 10 C -0.231 4.231 11 C -0.173 4.173 12 S 0.296 5.704 13 C -0.436 4.436 14 C 0.098 3.902 15 O -0.303 6.303 16 C -0.228 4.228 17 C -0.097 4.097 18 C 0.000 4.000 19 F -0.125 7.125 20 H 0.110 0.890 21 H 0.128 0.872 22 H 0.171 0.829 23 H 0.236 0.764 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.397 -3.246 0.220 3.277 hybrid contribution -0.908 -0.798 1.145 1.665 sum -0.511 -4.044 1.365 4.298 Atomic orbital electron populations 1.70525 1.08589 1.34300 1.22725 1.27198 0.95179 1.04842 0.90652 0.83687 0.76093 0.73459 0.78456 1.19450 1.19350 1.19735 1.20523 1.10904 0.96179 1.24979 0.88700 1.17497 0.90894 0.93112 0.90454 1.20056 1.13305 0.89866 0.99879 1.22071 1.02415 0.95565 0.97250 1.83591 1.67074 1.00538 1.19230 1.24606 1.17032 1.01337 1.00618 1.17038 0.97415 0.90883 0.84915 1.84817 1.23967 1.96167 1.25313 1.17432 1.15390 0.92604 0.97416 1.20085 1.00217 0.90559 0.98862 1.17366 1.09215 0.78590 0.94860 1.91381 1.94525 1.38189 1.88383 0.88954 0.87161 0.82945 0.76403 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.59 12.67 55.54 0.70 -17.88 14 2 C 0.05 1.19 3.78 -17.34 -0.07 1.12 14 3 Si 1.06 20.49 30.06 -169.99 -5.11 15.38 14 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 7 C -0.50 -12.35 8.70 -37.97 -0.33 -12.68 14 8 H 0.10 2.24 8.05 -52.49 -0.42 1.82 14 9 C 0.09 2.19 5.02 -106.84 -0.54 1.65 14 10 C -0.20 -4.84 9.81 -38.56 -0.38 -5.22 14 11 C -0.06 -1.31 6.45 -38.56 -0.25 -1.56 14 12 S 0.04 0.69 23.29 -107.50 -2.50 -1.81 14 13 C -0.30 -5.59 11.05 28.90 0.32 -5.27 14 14 C 0.15 3.07 6.71 -40.51 -0.27 2.80 14 15 O -0.49 -8.63 13.51 -20.18 -0.27 -8.90 14 16 C -0.22 -5.05 5.89 -106.76 -0.63 -5.68 14 17 C -0.08 -1.76 9.87 -39.17 -0.39 -2.14 14 18 C 0.02 0.49 6.71 -39.37 -0.26 0.23 14 19 F -0.15 -3.71 14.95 2.25 0.03 -3.68 14 20 H 0.30 7.62 8.13 -40.82 -0.33 7.29 14 21 H 0.11 2.46 8.06 -52.49 -0.42 2.04 14 22 H 0.15 2.40 8.06 -52.49 -0.42 1.98 14 23 H 0.38 4.73 9.07 45.56 0.41 5.15 14 24 H 0.11 2.36 8.06 -52.49 -0.42 1.94 14 LS Contribution 239.22 15.07 3.60 3.60 Total: -1.00 -27.05 239.22 -6.74 -33.79 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -0.41 Total: 6.25 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -2.79 Total: -26.75 kcal Atomic # 7 Polarization: -18.59 SS G_CDS: 0.70 Total: -17.88 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.27 Total: -8.90 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.11 Total: 15.38 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.50 Total: -1.81 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.05 -6.74 -33.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307079895.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.899 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds