Wall clock time and date at job start Mon Mar 30 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48494 * 109.46928 * 269.99513 * 3 2 1 5 5 H 1.48504 * 109.47160 * 29.99973 * 3 2 1 6 6 H 1.48503 * 109.46768 * 149.99436 * 3 2 1 7 7 C 1.37878 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00174 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99775 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.49288 * 59.97068 * 9 7 2 11 11 C 1.53091 * 109.48023 * 180.02562 * 9 7 2 12 12 C 1.53176 * 109.21206 * 177.62153 * 11 9 7 13 13 C 1.53174 * 109.04061 * 302.98570 * 12 11 9 14 14 C 1.53097 * 109.16185 * 56.97999 * 13 12 11 15 15 H 1.08997 * 109.47580 * 62.37620 * 14 13 12 16 16 C 1.50698 * 109.47829 * 182.39953 * 14 13 12 17 17 C 1.38422 * 122.53968 * 264.99800 * 16 14 13 18 18 C 1.33386 * 114.92321 * 179.97438 * 17 16 14 19 19 S 1.75887 * 109.59381 * 0.02562 * 18 17 16 20 20 C 1.33383 * 122.53820 * 84.71381 * 16 14 13 21 21 O 1.42902 * 109.41493 * 302.39739 * 14 13 12 22 22 H 0.96998 * 119.99740 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.52401 * 57.68305 * 11 9 7 24 24 H 1.09004 * 109.52068 * 297.55951 * 11 9 7 25 25 H 1.08995 * 109.54674 * 62.85906 * 12 11 9 26 26 H 1.09007 * 109.53937 * 183.03159 * 12 11 9 27 27 H 1.08995 * 109.52612 * 176.89131 * 13 12 11 28 28 H 1.09004 * 109.52214 * 297.01676 * 13 12 11 29 29 H 1.08008 * 122.54018 * 359.96458 * 17 16 14 30 30 H 1.08006 * 125.20358 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.20793 * 0.02709 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8750 -0.6796 0.8907 11 6 4.0221 -2.6373 0.0010 12 6 5.5527 -2.6306 -0.0584 13 6 6.0011 -1.8567 -1.3019 14 6 5.4153 -0.4431 -1.2524 15 1 5.8035 0.0808 -0.3789 16 6 5.8035 0.3058 -2.5013 17 6 6.9080 1.1382 -2.5573 18 6 7.1105 1.7246 -3.7381 19 16 5.8586 1.2243 -4.8676 20 6 5.1118 0.2123 -3.6379 21 8 3.9910 -0.5218 -1.1668 22 1 -0.4849 0.8400 -0.0004 23 1 3.6262 -3.1637 -0.8675 24 1 3.6951 -3.1394 0.9116 25 1 5.9502 -2.1480 0.8344 26 1 5.9200 -3.6554 -0.1131 27 1 7.0894 -1.7995 -1.3227 28 1 5.6461 -2.3679 -2.1968 29 1 7.5566 1.3007 -1.7091 30 1 7.9191 2.4036 -3.9655 31 1 4.2272 -0.3906 -3.7808 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307093367.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:19 Heat of formation + Delta-G solvation = -21.219374 kcal Electronic energy + Delta-G solvation = -15151.347723 eV Core-core repulsion = 12717.144828 eV Total energy + Delta-G solvation = -2434.202895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.11696 -37.03375 -32.93803 -32.66974 -30.90585 -28.70144 -26.22723 -24.49980 -22.37358 -21.50708 -19.45091 -18.48043 -17.43121 -16.73905 -15.73574 -15.05270 -14.35644 -14.14673 -13.95142 -13.38568 -12.93650 -12.59442 -12.49171 -12.24098 -12.16707 -11.83020 -11.13251 -11.02637 -10.75089 -10.66014 -10.48341 -10.07619 -9.94735 -9.60356 -9.10335 -8.62305 -8.57343 -8.42319 -8.05840 -6.12364 -4.21084 1.25790 1.87954 2.19648 2.92683 3.43294 3.48123 3.58003 4.47297 4.59794 5.14547 5.29089 5.39860 5.40019 5.53292 5.56950 5.71682 5.88770 5.94327 5.94886 6.17658 6.23078 6.33313 6.50494 6.58737 6.61818 6.66546 6.67575 6.85401 7.20610 7.62917 8.40839 8.50686 8.89822 9.50987 10.97493 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.009978 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.233122 B = 2805.536442 C = 3544.117005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.182 3.818 10 H 0.017 0.983 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.135 4.135 14 C 0.140 3.860 15 H 0.053 0.947 16 C -0.101 4.101 17 C -0.122 4.122 18 C -0.222 4.222 19 S 0.067 5.933 20 C -0.169 4.169 21 O -0.375 6.375 22 H 0.266 0.734 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.579 0.824 -5.488 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.121 4.121 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.099 0.901 9 C 0.126 3.874 10 H 0.035 0.965 11 C -0.172 4.172 12 C -0.160 4.160 13 C -0.173 4.173 14 C 0.079 3.921 15 H 0.070 0.930 16 C -0.113 4.113 17 C -0.153 4.153 18 C -0.357 4.357 19 S 0.330 5.670 20 C -0.304 4.304 21 O -0.295 6.295 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.974 1.332 -7.161 15.758 hybrid contribution 0.848 0.504 1.579 1.862 sum 14.822 1.836 -5.582 15.945 Atomic orbital electron populations 1.69932 1.06587 1.27494 1.48767 1.25064 0.94698 0.99875 0.92475 0.86342 0.79273 0.81996 0.78791 1.19907 1.23055 1.19587 1.20940 0.87364 0.94863 1.51734 0.90084 1.20344 0.94988 0.87879 0.84139 0.96498 1.22061 0.93074 1.00121 1.01908 1.21661 0.97783 0.99300 0.97303 1.22089 0.99635 0.96347 0.99208 1.20383 0.86109 0.93135 0.92516 0.92956 1.18885 0.96204 1.00219 0.95946 1.20015 0.98621 0.98433 0.98199 1.25421 1.04578 1.08317 0.97358 1.84107 1.22539 1.43772 1.16574 1.25551 1.04742 1.04881 0.95271 1.88260 1.15841 1.78042 1.47403 0.92441 0.91893 0.91852 0.92552 0.92530 0.92180 0.91374 0.84466 0.82160 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.96 55.43 0.77 -26.64 16 2 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.91 23.62 26.19 -169.99 -4.45 19.17 16 4 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.82 6.54 56.52 0.37 -6.45 16 7 C -0.51 -14.63 9.38 -34.44 -0.32 -14.95 16 8 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 9 C 0.18 4.37 1.98 -27.83 -0.06 4.32 16 10 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 11 C -0.13 -2.68 5.35 -26.59 -0.14 -2.82 16 12 C -0.12 -2.00 6.03 -26.55 -0.16 -2.16 16 13 C -0.13 -2.18 5.40 -26.59 -0.14 -2.32 16 14 C 0.14 2.64 2.95 -27.83 -0.08 2.56 16 15 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 16 C -0.10 -1.76 4.91 -106.25 -0.52 -2.28 16 17 C -0.12 -1.78 9.96 -41.21 -0.41 -2.19 16 18 C -0.22 -2.90 11.23 29.04 0.33 -2.58 16 19 S 0.07 0.94 23.34 -107.50 -2.51 -1.56 16 20 C -0.17 -2.92 10.52 29.04 0.31 -2.61 16 21 O -0.37 -8.80 7.23 -35.23 -0.25 -9.05 16 22 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.17 3.08 7.98 -52.49 -0.42 2.66 16 LS Contribution 269.20 15.07 4.06 4.06 Total: -1.00 -30.76 269.20 -7.87 -38.63 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.18 Total: -1.92 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.30 Total: -22.67 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.25 Total: -9.05 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.45 Total: 19.17 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.76 -7.87 -38.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307093367.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.414 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds