Wall clock time and date at job start Mon Mar 30 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48494 * 109.46928 * 269.99513 * 3 2 1 5 5 H 1.48504 * 109.47160 * 29.99973 * 3 2 1 6 6 H 1.48503 * 109.46768 * 149.99436 * 3 2 1 7 7 C 1.37878 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00174 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99775 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.49288 * 59.97068 * 9 7 2 11 11 C 1.53091 * 109.48023 * 180.02562 * 9 7 2 12 12 C 1.53176 * 109.21206 * 177.62153 * 11 9 7 13 13 C 1.53174 * 109.04061 * 302.98570 * 12 11 9 14 14 C 1.53097 * 109.16185 * 56.97999 * 13 12 11 15 15 H 1.08997 * 109.47580 * 62.37620 * 14 13 12 16 16 C 1.50698 * 109.47829 * 182.39953 * 14 13 12 17 17 C 1.38422 * 122.53968 * 264.99800 * 16 14 13 18 18 C 1.33386 * 114.92321 * 179.97438 * 17 16 14 19 19 S 1.75887 * 109.59381 * 0.02562 * 18 17 16 20 20 C 1.33383 * 122.53820 * 84.71381 * 16 14 13 21 21 O 1.42902 * 109.41493 * 302.39739 * 14 13 12 22 22 H 0.96998 * 119.99740 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.52401 * 57.68305 * 11 9 7 24 24 H 1.09004 * 109.52068 * 297.55951 * 11 9 7 25 25 H 1.08995 * 109.54674 * 62.85906 * 12 11 9 26 26 H 1.09007 * 109.53937 * 183.03159 * 12 11 9 27 27 H 1.08995 * 109.52612 * 176.89131 * 13 12 11 28 28 H 1.09004 * 109.52214 * 297.01676 * 13 12 11 29 29 H 1.08008 * 122.54018 * 359.96458 * 17 16 14 30 30 H 1.08006 * 125.20358 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.20793 * 0.02709 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8750 -0.6796 0.8907 11 6 4.0221 -2.6373 0.0010 12 6 5.5527 -2.6306 -0.0584 13 6 6.0011 -1.8567 -1.3019 14 6 5.4153 -0.4431 -1.2524 15 1 5.8035 0.0808 -0.3789 16 6 5.8035 0.3058 -2.5013 17 6 6.9080 1.1382 -2.5573 18 6 7.1105 1.7246 -3.7381 19 16 5.8586 1.2243 -4.8676 20 6 5.1118 0.2123 -3.6379 21 8 3.9910 -0.5218 -1.1668 22 1 -0.4849 0.8400 -0.0004 23 1 3.6262 -3.1637 -0.8675 24 1 3.6951 -3.1394 0.9116 25 1 5.9502 -2.1480 0.8344 26 1 5.9200 -3.6554 -0.1131 27 1 7.0894 -1.7995 -1.3227 28 1 5.6461 -2.3679 -2.1968 29 1 7.5566 1.3007 -1.7091 30 1 7.9191 2.4036 -3.9655 31 1 4.2272 -0.3906 -3.7808 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307093367.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:18 Heat of formation + Delta-G solvation = -39.894684 kcal Electronic energy + Delta-G solvation = -15152.157545 eV Core-core repulsion = 12717.144828 eV Total energy + Delta-G solvation = -2435.012718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59894 -38.38978 -34.91682 -34.33285 -32.54926 -30.04678 -28.00032 -25.98686 -23.77313 -23.13292 -20.99698 -19.72789 -19.08004 -18.42604 -17.20215 -16.85413 -16.02374 -15.67490 -15.43116 -14.98011 -14.40878 -14.34230 -13.87739 -13.61655 -13.33629 -13.30841 -12.94125 -12.65066 -12.58213 -12.01526 -11.97236 -11.78822 -11.69426 -11.31792 -11.01087 -10.79622 -10.12202 -9.68276 -9.27050 -8.39332 -6.51389 0.10502 0.75281 1.06840 1.31313 1.39123 1.48011 1.74054 2.33453 2.77259 3.41497 3.98118 4.04941 4.07664 4.20174 4.32770 4.36790 4.39399 4.58947 4.70086 4.76895 4.93040 5.02175 5.06458 5.13219 5.18859 5.24733 5.43799 5.49806 5.55902 5.64062 6.20327 6.52716 6.84011 7.24934 8.74530 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.009978 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.233122 B = 2805.536442 C = 3544.117005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.523 4.523 8 H 0.046 0.954 9 C 0.184 3.816 10 H 0.015 0.985 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.128 4.128 14 C 0.129 3.871 15 H 0.058 0.942 16 C -0.111 4.111 17 C -0.138 4.138 18 C -0.202 4.202 19 S 0.095 5.905 20 C -0.208 4.208 21 O -0.400 6.400 22 H 0.269 0.731 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.162 0.838 30 H 0.199 0.801 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.104 1.864 -5.749 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.169 4.169 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.129 3.871 10 H 0.033 0.967 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.166 4.166 14 C 0.069 3.931 15 H 0.076 0.924 16 C -0.123 4.123 17 C -0.168 4.168 18 C -0.337 4.337 19 S 0.359 5.641 20 C -0.343 4.343 21 O -0.321 6.321 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.180 0.820 30 H 0.216 0.784 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 17.516 2.360 -7.421 19.169 hybrid contribution -0.229 0.141 1.578 1.601 sum 17.287 2.501 -5.843 18.419 Atomic orbital electron populations 1.70044 1.08104 1.28416 1.50953 1.25851 0.95353 1.03225 0.92455 0.85401 0.78728 0.78213 0.78336 1.20740 1.22322 1.17936 1.21263 0.90308 0.93472 1.50965 0.93557 1.20103 0.92266 0.90512 0.84227 0.96718 1.21973 0.96352 0.97170 1.01423 1.21634 0.94274 1.01373 0.97954 1.22047 1.01420 0.94334 0.98758 1.20703 0.83361 0.95337 0.93737 0.92425 1.19022 0.97379 1.00844 0.95075 1.20172 0.98386 0.98496 0.99789 1.25915 1.04325 1.07263 0.96194 1.83996 1.22298 1.42360 1.15478 1.25527 1.05072 1.06580 0.97166 1.88124 1.19309 1.78142 1.46503 0.92217 0.93292 0.91630 0.91205 0.89586 0.88833 0.92202 0.82032 0.78406 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.03 1.90 5.47 84.65 0.46 2.36 16 3 Si 0.97 49.38 26.19 68.60 1.80 51.18 16 4 H -0.28 -14.62 7.11 99.48 0.71 -13.92 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.26 -12.23 6.54 99.48 0.65 -11.58 16 7 C -0.52 -30.94 9.38 25.60 0.24 -30.70 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 9 C 0.18 8.92 1.98 29.88 0.06 8.98 16 10 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 11 C -0.13 -5.19 5.35 30.68 0.16 -5.03 16 12 C -0.11 -3.40 6.03 30.71 0.19 -3.21 16 13 C -0.13 -3.78 5.40 30.69 0.17 -3.61 16 14 C 0.13 4.64 2.95 29.88 0.09 4.72 16 15 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 16 C -0.11 -3.65 4.91 -20.92 -0.10 -3.75 16 17 C -0.14 -3.55 9.96 21.22 0.21 -3.33 16 18 C -0.20 -4.44 11.23 66.72 0.75 -3.69 16 19 S 0.10 2.46 23.34 -56.49 -1.32 1.14 16 20 C -0.21 -7.05 10.52 66.72 0.70 -6.35 16 21 O -0.40 -18.69 7.23 -148.98 -1.08 -19.77 16 22 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 23 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.15 5.55 7.98 -2.91 -0.02 5.53 16 Total: -1.00 -68.56 269.20 3.67 -64.89 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.05 Total: 5.55 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 2.92 Total: -43.62 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.08 Total: -19.77 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.80 Total: 51.18 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.14 kcal Total: -68.56 3.67 -64.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307093367.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.997 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds