Wall clock time and date at job start Mon Mar 30 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.48198 * 300.01948 * 9 7 2 11 11 C 1.53098 * 109.48171 * 179.97438 * 9 7 2 12 12 C 1.53175 * 109.16171 * 297.62933 * 11 9 7 13 13 C 1.53178 * 109.03714 * 303.01595 * 12 11 9 14 14 C 1.53094 * 109.16522 * 56.97973 * 13 12 11 15 15 H 1.09002 * 109.47370 * 62.37168 * 14 13 12 16 16 C 1.50697 * 109.48429 * 182.39835 * 14 13 12 17 17 C 1.38422 * 122.53839 * 265.00661 * 16 14 13 18 18 C 1.33392 * 114.91768 * 179.97438 * 17 16 14 19 19 S 1.75886 * 109.59397 * 359.97438 * 18 17 16 20 20 C 1.33384 * 122.53778 * 84.70803 * 16 14 13 21 21 O 1.42898 * 109.48275 * 60.05821 * 9 7 2 22 22 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 23 23 H 1.09006 * 109.51717 * 57.52983 * 11 9 7 24 24 H 1.08994 * 109.52444 * 177.71951 * 11 9 7 25 25 H 1.08997 * 109.54652 * 62.88054 * 12 11 9 26 26 H 1.09002 * 109.54114 * 183.05966 * 12 11 9 27 27 H 1.08997 * 109.52246 * 176.89137 * 13 12 11 28 28 H 1.09005 * 109.51848 * 297.01729 * 13 12 11 29 29 H 1.07994 * 122.54175 * 359.95169 * 17 16 14 30 30 H 1.08000 * 125.19977 * 179.97438 * 18 17 16 31 31 H 1.08004 * 125.20308 * 0.03462 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6238 -2.5528 0.9012 11 6 2.2457 -3.6630 0.0166 12 6 3.0824 -3.6149 -1.2655 13 6 2.1447 -3.6570 -2.4760 14 6 1.1539 -2.4935 -2.3849 15 1 1.6977 -1.5495 -2.4203 16 6 0.1902 -2.5621 -3.5414 17 6 0.3833 -1.8531 -4.7145 18 6 -0.5633 -2.0264 -5.6382 19 16 -1.7826 -3.1395 -5.0316 20 6 -0.9103 -3.3152 -3.5145 21 8 0.4309 -2.5810 -1.1558 22 1 -0.4850 0.8401 -0.0041 23 1 2.9016 -3.5777 0.8831 24 1 1.7020 -4.6066 0.0616 25 1 3.6642 -2.6935 -1.2869 26 1 3.7554 -4.4719 -1.2940 27 1 2.7284 -3.5676 -3.3922 28 1 1.5997 -4.6010 -2.4819 29 1 1.2355 -1.2083 -4.8699 30 1 -0.5787 -1.5553 -6.6099 31 1 -1.2195 -3.9366 -2.6869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307093373.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:21 Heat of formation + Delta-G solvation = -22.863858 kcal Electronic energy + Delta-G solvation = -15294.396704 eV Core-core repulsion = 12860.122498 eV Total energy + Delta-G solvation = -2434.274206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.76070 -36.75828 -32.58433 -32.28165 -30.50809 -28.30958 -25.84053 -24.19176 -22.29843 -21.68134 -18.99116 -18.21583 -17.15005 -16.31612 -15.29215 -14.69382 -14.08996 -13.97355 -13.57140 -13.17622 -12.82270 -12.42122 -12.08794 -11.93402 -11.78525 -11.33625 -11.18843 -10.93972 -10.61660 -10.58254 -10.28762 -10.15595 -9.71038 -9.57560 -8.74174 -8.46529 -8.31039 -8.02143 -7.64849 -5.98512 -4.13831 1.50155 2.11246 2.42235 3.23988 3.27149 3.35860 3.38397 4.40288 5.01734 5.33663 5.52582 5.68611 5.76344 5.83427 5.88637 6.04916 6.23058 6.27404 6.37592 6.49414 6.52916 6.66848 6.83520 6.88529 6.97549 7.03724 7.06050 7.27389 7.70335 7.87824 8.22138 8.82946 9.09065 9.58552 11.05690 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.009337 C = 0.007824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.113025 B = 2998.048914 C = 3577.765483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.212 3.788 10 H 0.061 0.939 11 C -0.142 4.142 12 C -0.109 4.109 13 C -0.135 4.135 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.084 4.084 17 C -0.116 4.116 18 C -0.222 4.222 19 S 0.048 5.952 20 C -0.176 4.176 21 O -0.366 6.366 22 H 0.259 0.741 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -5.524 -8.318 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.708 3.292 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.156 3.844 10 H 0.079 0.921 11 C -0.180 4.180 12 C -0.146 4.146 13 C -0.173 4.173 14 C 0.101 3.899 15 H 0.089 0.911 16 C -0.096 4.096 17 C -0.147 4.147 18 C -0.357 4.357 19 S 0.310 5.690 20 C -0.311 4.311 21 O -0.285 6.285 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.176 0.824 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.126 -6.046 -8.897 10.816 hybrid contribution 2.003 1.692 0.570 2.683 sum 0.877 -4.354 -8.327 9.437 Atomic orbital electron populations 1.70066 1.05810 1.26224 1.47120 1.25031 0.94642 0.98897 0.94075 0.86738 0.80383 0.84364 0.77735 1.19679 1.20930 1.20896 1.21569 0.93147 0.91106 1.53848 0.92418 1.19719 0.88616 0.90961 0.85082 0.92143 1.22187 0.99284 0.99667 0.96878 1.21449 0.97346 1.00812 0.95023 1.22104 0.98080 0.99289 0.97835 1.20041 0.89185 0.97155 0.83498 0.91059 1.19036 0.97422 0.97095 0.96024 1.20076 1.00469 1.01163 0.93023 1.25357 0.99448 1.06809 1.04116 1.83939 1.28278 1.45275 1.11549 1.25380 0.98981 1.06848 0.99874 1.87908 1.34792 1.93499 1.12329 0.93090 0.92565 0.94084 0.91278 0.94027 0.92762 0.92686 0.84520 0.82438 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.86 12.84 55.43 0.71 -24.15 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.56 -14.90 6.59 -34.44 -0.23 -15.13 16 8 H 0.06 1.52 6.87 -52.49 -0.36 1.16 16 9 C 0.21 5.31 3.16 -27.84 -0.09 5.22 16 10 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 11 C -0.14 -2.95 5.59 -26.59 -0.15 -3.10 16 12 C -0.11 -2.06 5.78 -26.55 -0.15 -2.21 16 13 C -0.13 -2.53 5.40 -26.59 -0.14 -2.67 16 14 C 0.16 3.54 2.68 -27.84 -0.07 3.46 16 15 H 0.07 1.73 7.05 -51.93 -0.37 1.36 16 16 C -0.08 -1.66 4.91 -106.25 -0.52 -2.18 16 17 C -0.12 -2.00 9.96 -41.21 -0.41 -2.42 16 18 C -0.22 -3.35 11.23 29.04 0.33 -3.03 16 19 S 0.05 0.72 23.34 -107.50 -2.51 -1.79 16 20 C -0.18 -3.24 10.52 29.04 0.31 -2.93 16 21 O -0.37 -9.20 9.10 -35.23 -0.32 -9.52 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.38 6.85 -51.93 -0.36 1.03 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.16 3.02 7.98 -52.48 -0.42 2.60 16 LS Contribution 269.39 15.07 4.06 4.06 Total: -1.00 -28.83 269.39 -8.33 -37.16 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.02 Total: 1.19 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.23 Total: -22.89 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.71 Total: -24.15 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.32 Total: -9.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.83 -8.33 -37.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307093373.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.299 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds